Index

_

__init__() (mcutils.pipe.Pipeline method) (mcutils.pipe.Script method) (mcutils.pipe.ScriptRun method) (mcutils.pipe.SubmitParams method) (mcutils.pipe.Target method) (mcutils.scripts.cifti.correlate.FakeDConn method) (mcutils.scripts.cifti.correlate.FakeDConnDataObject method) (mcutils.scripts.MDE.btensor.QTrajectory method) (mcutils.scripts.MDE.fit_dispersion.Fitter method) (mcutils.scripts.MDE.generate_data.Generator method) (mcutils.scripts.MDE.generate_data.Tissue method) (mcutils.scripts.MDE.spherical_mean.SPHModel method) (mcutils.utils.greyordinate.GreyOrdinates method) (mcutils.utils.noise.LogBessel method) (mcutils.utils.scripts.ScriptDirectory method) (mcutils.utils.sidecar.AcquisitionParams method) (mcutils.utils.wb_scene.Scene method)

A

AcquisitionParams (class in mcutils.utils.sidecar) add() (mcutils.pipe.Pipeline method) add_index_params() (in module mcutils.scripts.sidecar.index) add_to_graph() (mcutils.pipe.ScriptRun method) (mcutils.pipe.Target method) add_to_parser() (in module mcutils.scripts.bibtex.query) (in module mcutils.scripts.bibtex.update) (in module mcutils.scripts.cifti.convert) (in module mcutils.scripts.cifti.correlate) (in module mcutils.scripts.cifti.ptx2dconn) (in module mcutils.scripts.cifti.smooth) (in module mcutils.scripts.function.normalize) (in module mcutils.scripts.iter_link) (in module mcutils.scripts.mask_dlabel) (in module mcutils.scripts.MDE.btensor) (in module mcutils.scripts.MDE.fit_dispersion) (in module mcutils.scripts.MDE.generate_data) (in module mcutils.scripts.MDE.micro_anisotropy) (in module mcutils.scripts.MDE.spherical_mean) (in module mcutils.scripts.merge_hcp) (in module mcutils.scripts.non_central_chi.correct) (in module mcutils.scripts.non_central_chi.variance) (in module mcutils.scripts.parcel.cluster) (in module mcutils.scripts.parcel.combine) (in module mcutils.scripts.parcel.discretise) (in module mcutils.scripts.parcel.random) (in module mcutils.scripts.parcel.spectral) (in module mcutils.scripts.plot.scatter_dconn) (in module mcutils.scripts.plot.scatter_dscalar) (in module mcutils.scripts.plot.scatter_gifti) (in module mcutils.scripts.ptx.select_vertex) (in module mcutils.scripts.round_bvals) (in module mcutils.scripts.sidecar.index) (in module mcutils.scripts.split.merge) (in module mcutils.scripts.split.submit) (in module mcutils.scripts.surface.from_mask) (in module mcutils.scripts.surface.from_ridge) (in module mcutils.scripts.surface.gradient) (in module mcutils.scripts.surface.roi_dist_gifti) (in module mcutils.scripts.surface.smooth) (in module mcutils.scripts.surface.watershed) (in module mcutils.scripts.to_dataframe) (in module mcutils.scripts.to_dataframe_tree) (in module mcutils.scripts.tree.extract) (in module mcutils.scripts.tree.from_jal) (mcutils.pipe.SubmitParams class method)

angle2bvec() (in module mcutils.utils.sidecar) angle2fullrot() (in module mcutils.utils.sidecar) angles_from_dti() (in module mcutils.scripts.MDE.fit_dispersion) approximate() (mcutils.utils.noise.LogBessel class method) as_dask() (mcutils.pipe.ScriptRun method) (mcutils.utils.greyordinate.GreyOrdinates method) as_flags() (mcutils.pipe.SubmitParams method) auto_update() (mcutils.utils.sidecar.AcquisitionParams method) axis_from_hdf5() (in module mcutils.utils.cifti) axis_to_hdf5() (in module mcutils.utils.cifti)

B

beta_ncoils() (in module mcutils.scripts.non_central_chi.variance) bingham() (mcutils.scripts.MDE.generate_data.Generator method) bingham_matrix() (in module mcutils.scripts.MDE.fit_dispersion) bingham_normalization() (in module mcutils.utils.hypergeometry)

bt2b() (in module mcutils.utils.sidecar) bt2btensor() (in module mcutils.utils.sidecar) btensor() (mcutils.scripts.MDE.btensor.QTrajectory method) btensor2bt() (in module mcutils.utils.sidecar) bvec2angle() (in module mcutils.utils.sidecar)

C

calc_distance() (in module mcutils.utils.kmedoids) cart2spherical() (in module mcutils.utils.spherical) check() (mcutils.utils.sidecar.AcquisitionParams method) clean() (in module mcutils.scripts.MDE.fit_dispersion) clean_euler() (in module mcutils.utils.spherical) clear() (mcutils.utils.sidecar.AcquisitionParams method) cli() (mcutils.pipe.Pipeline method) cluster() (in module mcutils.scripts.parcel.cluster) combine() (in module mcutils.utils.cifti) concat() (in module mcutils.utils.sidecar)

concatenate() (in module mcutils.utils.greyordinate) contains() (in module mcutils.sync) convert_filenames() (in module mcutils.scripts.to_dataframe) copy() (in module mcutils.scripts.cifti.convert) (mcutils.utils.sidecar.AcquisitionParams method) correct_data() (in module mcutils.scripts.non_central_chi.correct) correct_type() (in module mcutils.utils.write_gifti) correction_factor() (in module mcutils.scripts.non_central_chi.variance) correlate() (in module mcutils.scripts.cifti.correlate) correlate_arr() (in module mcutils.scripts.cifti.correlate) cudimot() (in module mcutils.cudimot)

D

dataframe_to_array() (in module mcutils.scripts.to_dataframe) decompose() (in module mcutils.utils.sidecar) default_grid() (in module mcutils.plot) delete_cache() (mcutils.pipe.Target method) density_scatter() (in module mcutils.plot)

dependencies() (mcutils.pipe.ScriptRun method) der_bingham_normalization() (in module mcutils.utils.hypergeometry) der_hyp_Sapprox() (in module mcutils.utils.hypergeometry) distance() (in module mcutils.scripts.surface.gradient) dot2matrix() (in module mcutils.scripts.cifti.ptx2dconn)

E

eigenvalues2shape() (in module mcutils.utils.sidecar) empty() (mcutils.utils.greyordinate.GreyOrdinates class method) empty_cifti() (mcutils.utils.greyordinate.GreyOrdinates class method) empty_hdf5() (in module mcutils.utils.cifti) (mcutils.utils.greyordinate.GreyOrdinates class method)

empty_zarr() (in module mcutils.utils.cifti) (mcutils.utils.greyordinate.GreyOrdinates class method) euler2mat() (in module mcutils.utils.spherical) eval() (mcutils.utils.noise.LogBessel class method)

F

FakeDConn (class in mcutils.scripts.cifti.correlate) FakeDConnDataObject (class in mcutils.scripts.cifti.correlate) file_or_short_name() (in module mcutils.cudimot) find_common() (in module mcutils.scripts.plot.scatter_dscalar) find_t() (in module mcutils.utils.hypergeometry) fit() (mcutils.scripts.MDE.spherical_mean.SPHModel method) fit_parameters() (in module mcutils.scripts.non_central_chi.correct) fit_sph_harm() (in module mcutils.scripts.MDE.spherical_mean) Fitter (class in mcutils.scripts.MDE.fit_dispersion) formatter() (in module mcutils.utils.log) from_args() (mcutils.pipe.SubmitParams class method) from_cifti() (in module mcutils.scripts.to_dataframe) (mcutils.utils.greyordinate.GreyOrdinates class method)

from_filename() (mcutils.utils.greyordinate.GreyOrdinates class method) from_gifti() (in module mcutils.scripts.to_dataframe) (mcutils.utils.greyordinate.GreyOrdinates class method) from_hdf5() (in module mcutils.utils.cifti) (mcutils.utils.greyordinate.GreyOrdinates class method) from_json() (mcutils.utils.sidecar.AcquisitionParams class method) from_mat() (mcutils.utils.sidecar.AcquisitionParams class method) from_nifti() (in module mcutils.scripts.to_dataframe) (mcutils.utils.greyordinate.GreyOrdinates class method) from_pandas() (mcutils.utils.sidecar.AcquisitionParams class method) fromkeys() (mcutils.utils.sidecar.AcquisitionParams method) fullrot2angle() (in module mcutils.utils.sidecar)

G

generates() (in module mcutils.pipe) Generator (class in mcutils.scripts.MDE.generate_data) get() (mcutils.utils.scripts.ScriptDirectory method) (mcutils.utils.sidecar.AcquisitionParams method) get_bmat() (in module mcutils.scripts.MDE.generate_data) get_brain_model() (in module mcutils.scripts.cifti.ptx2dconn) get_docstring() (in module mcutils.utils.scripts) get_dyad_names() (in module mcutils.cudimot) get_graph_filenames() (mcutils.pipe.Pipeline method) get_index() (mcutils.utils.sidecar.AcquisitionParams method) get_indices() (in module mcutils.scripts.sidecar.index) get_job_name() (in module mcutils.scripts.split.submit)

get_kwargs() (mcutils.pipe.ScriptRun method) get_level() (in module mcutils.utils.log) get_markers() (in module mcutils.scripts.split.run) get_names() (in module mcutils.scripts.split.submit) get_param_names() (in module mcutils.cudimot) get_params() (in module mcutils.scripts.non_central_chi.correct) get_sidecar() (in module mcutils.utils.sidecar) get_target() (mcutils.pipe.Pipeline method) greyordinate_in() (in module mcutils.utils.scripts) GreyOrdinates (class in mcutils.utils.greyordinate) groupby() (mcutils.utils.sidecar.AcquisitionParams method) guess_extension() (in module mcutils.utils.cifti) guess_parameters() (in module mcutils.scripts.non_central_chi.correct)

H

has_mcmc() (in module mcutils.cudimot)

HCP_dir() (in module mcutils.hcp_dir) hyp_Sapprox() (in module mcutils.utils.hypergeometry)

I

init_center() (in module mcutils.utils.kmedoids) init_random() (in module mcutils.utils.kmedoids) input_exists() (mcutils.pipe.ScriptRun method) interpolate() (mcutils.utils.noise.LogBessel class method) items() (mcutils.utils.sidecar.AcquisitionParams method)

iter() (mcutils.utils.wb_scene.Scene method) iter_filenames() (in module mcutils.pipe) (mcutils.utils.wb_scene.Scene method) iter_vars_array() (mcutils.pipe.Script method) iterate() (mcutils.scripts.MDE.fit_dispersion.Fitter method)

J

joint_density_scatter() (in module mcutils.plot)

K

keys() (mcutils.utils.sidecar.AcquisitionParams method)

kmedoids() (in module mcutils.utils.kmedoids)

L

leavekout() (mcutils.scripts.MDE.spherical_mean.SPHModel method) link() (in module mcutils.hcp_dir) link_dir() (in module mcutils.scripts.iter_link) log_function() (in module mcutils.utils.log)

log_non_central_chi() (in module mcutils.utils.noise) log_rician() (in module mcutils.utils.noise) LogBessel (class in mcutils.utils.noise) logp() (in module mcutils.scripts.non_central_chi.correct)

M

main() (in module mcutils.scripts.gcoord.gen) (in module mcutils.scripts.gcoord.mult) (in module mcutils.scripts.gcoord.split) (in module mcutils.scripts.gcoord.transition) (in module mcutils.scripts.sidecar.merge) (in module mcutils.scripts.split.run) make_output_directories() (mcutils.pipe.ScriptRun method) mat2euler() (in module mcutils.utils.spherical) mcutils module mcutils.cudimot module mcutils.hcp_dir module mcutils.pipe module mcutils.plot module mcutils.register.multi_image module mcutils.scripts module mcutils.scripts.bibtex.query module mcutils.scripts.bibtex.update module mcutils.scripts.cifti.convert module mcutils.scripts.cifti.correlate module mcutils.scripts.cifti.ptx2dconn module mcutils.scripts.cifti.smooth module mcutils.scripts.function.normalize module mcutils.scripts.gcoord.gen module mcutils.scripts.gcoord.gui module mcutils.scripts.gcoord.mult module mcutils.scripts.gcoord.split module mcutils.scripts.gcoord.transition module mcutils.scripts.iter_link module mcutils.scripts.mask_dlabel module mcutils.scripts.MDE.btensor module mcutils.scripts.MDE.fit_dispersion module mcutils.scripts.MDE.generate_data module mcutils.scripts.MDE.micro_anisotropy module mcutils.scripts.MDE.spherical_mean module mcutils.scripts.merge_hcp module mcutils.scripts.non_central_chi.correct module mcutils.scripts.non_central_chi.variance module mcutils.scripts.parcel.cluster module mcutils.scripts.parcel.combine module mcutils.scripts.parcel.discretise module mcutils.scripts.parcel.random module mcutils.scripts.parcel.spectral module mcutils.scripts.plot.scatter_dconn module mcutils.scripts.plot.scatter_dscalar module mcutils.scripts.plot.scatter_gifti module mcutils.scripts.ptx.select_vertex module mcutils.scripts.round_bvals module mcutils.scripts.sidecar.index module mcutils.scripts.sidecar.merge module mcutils.scripts.split.merge module mcutils.scripts.split.run module mcutils.scripts.split.submit module mcutils.scripts.surface.from_mask module mcutils.scripts.surface.from_ridge module mcutils.scripts.surface.gradient module mcutils.scripts.surface.roi_dist_gifti module mcutils.scripts.surface.smooth module mcutils.scripts.surface.watershed module mcutils.scripts.to_dataframe module mcutils.scripts.to_dataframe_tree module

mcutils.scripts.tree.extract module mcutils.scripts.tree.from_jal module mcutils.sync module mcutils.utils.bibtex module mcutils.utils.cifti module mcutils.utils.colour module mcutils.utils.greyordinate module mcutils.utils.hypergeometry module mcutils.utils.kmedoids module mcutils.utils.log module mcutils.utils.noise module mcutils.utils.scripts module mcutils.utils.sidecar module mcutils.utils.spherical module mcutils.utils.trajectory module mcutils.utils.wb_scene module mcutils.utils.write_gifti module mean_signal() (in module mcutils.scripts.MDE.micro_anisotropy) merge_basenames() (in module mcutils.scripts.split.merge) merge_directories() (in module mcutils.scripts.split.merge) merge_files() (in module mcutils.scripts.split.merge) merge_hcp() (in module mcutils.hcp_dir) merge_hcp_cmd() (in module mcutils.hcp_dir) micro_anisotropy() (mcutils.scripts.MDE.generate_data.Generator method) missing() (mcutils.pipe.ScriptRun method) module mcutils mcutils.cudimot mcutils.hcp_dir mcutils.pipe mcutils.plot mcutils.register.multi_image mcutils.scripts mcutils.scripts.bibtex.query mcutils.scripts.bibtex.update mcutils.scripts.cifti.convert mcutils.scripts.cifti.correlate mcutils.scripts.cifti.ptx2dconn mcutils.scripts.cifti.smooth mcutils.scripts.function.normalize mcutils.scripts.gcoord.gen mcutils.scripts.gcoord.gui mcutils.scripts.gcoord.mult mcutils.scripts.gcoord.split mcutils.scripts.gcoord.transition mcutils.scripts.iter_link mcutils.scripts.mask_dlabel mcutils.scripts.MDE.btensor mcutils.scripts.MDE.fit_dispersion mcutils.scripts.MDE.generate_data mcutils.scripts.MDE.micro_anisotropy mcutils.scripts.MDE.spherical_mean mcutils.scripts.merge_hcp mcutils.scripts.non_central_chi.correct mcutils.scripts.non_central_chi.variance mcutils.scripts.parcel.cluster mcutils.scripts.parcel.combine mcutils.scripts.parcel.discretise mcutils.scripts.parcel.random mcutils.scripts.parcel.spectral mcutils.scripts.plot.scatter_dconn mcutils.scripts.plot.scatter_dscalar mcutils.scripts.plot.scatter_gifti mcutils.scripts.ptx.select_vertex mcutils.scripts.round_bvals mcutils.scripts.sidecar.index mcutils.scripts.sidecar.merge mcutils.scripts.split.merge mcutils.scripts.split.run mcutils.scripts.split.submit mcutils.scripts.surface.from_mask mcutils.scripts.surface.from_ridge mcutils.scripts.surface.gradient mcutils.scripts.surface.roi_dist_gifti mcutils.scripts.surface.smooth mcutils.scripts.surface.watershed mcutils.scripts.to_dataframe mcutils.scripts.to_dataframe_tree mcutils.scripts.tree.extract mcutils.scripts.tree.from_jal mcutils.sync mcutils.utils.bibtex mcutils.utils.cifti mcutils.utils.colour mcutils.utils.greyordinate mcutils.utils.hypergeometry mcutils.utils.kmedoids mcutils.utils.log mcutils.utils.noise mcutils.utils.scripts mcutils.utils.sidecar mcutils.utils.spherical mcutils.utils.trajectory mcutils.utils.wb_scene mcutils.utils.write_gifti multi_reg() (in module mcutils.register.multi_image)

N

new_snr_fixed_point() (in module mcutils.scripts.non_central_chi.variance)

new_snr_newton() (in module mcutils.scripts.non_central_chi.variance)

O

only_angle() (mcutils.scripts.MDE.fit_dispersion.Fitter method)

output() (in module mcutils.utils.scripts) output_exists() (mcutils.pipe.ScriptRun method)

P

params_to_error() (in module mcutils.scripts.MDE.fit_dispersion) params_to_non_central_logp() (in module mcutils.scripts.MDE.fit_dispersion) params_to_signal() (in module mcutils.scripts.MDE.fit_dispersion) parse_args() (in module mcutils.scripts.sidecar.merge) (in module mcutils.scripts.split.run) parse_greyordinate() (in module mcutils.utils.greyordinate) path_storage() (in module mcutils.sync) path_work() (in module mcutils.sync)

per_shell() (mcutils.scripts.MDE.fit_dispersion.Fitter method) Pipeline (class in mcutils.pipe) plot() (mcutils.scripts.MDE.btensor.QTrajectory method) pop() (mcutils.utils.sidecar.AcquisitionParams method) popitem() (mcutils.utils.sidecar.AcquisitionParams method) post_cudimot() (in module mcutils.cudimot) print_missing_runs() (mcutils.pipe.Pipeline method) provides_iter() (mcutils.pipe.ScriptRun method)

Q

QTrajectory (class in mcutils.scripts.MDE.btensor)

qualitative() (in module mcutils.utils.colour) qvec() (mcutils.scripts.MDE.btensor.QTrajectory method)

R

ratio_LTE_PTE() (in module mcutils.scripts.MDE.micro_anisotropy) ratio_LTE_STE() (in module mcutils.scripts.MDE.micro_anisotropy) ratio_PTE_STE() (in module mcutils.scripts.MDE.micro_anisotropy) read() (in module mcutils.utils.trajectory) (mcutils.utils.sidecar.AcquisitionParams class method) (mcutils.utils.wb_scene.Scene class method) read_ascii() (in module mcutils.scripts.cifti.ptx2dconn) read_bvals_bvecs() (mcutils.utils.sidecar.AcquisitionParams class method) read_bvecs() (in module mcutils.scripts.MDE.spherical_mean) read_dscalar() (in module mcutils.scripts.plot.scatter_dscalar) reconstruct() (in module mcutils.utils.sidecar) reduce() (in module mcutils.scripts.surface.gradient) register_conversion() (in module mcutils.utils.sidecar) required_flags() (in module mcutils.cudimot) requires_iter() (mcutils.pipe.ScriptRun method) resolve() (in module mcutils.register.multi_image) run() (in module mcutils.scripts.bibtex.query) (in module mcutils.scripts.cifti.correlate) (in module mcutils.scripts.cifti.ptx2dconn) (in module mcutils.scripts.function.normalize) (in module mcutils.scripts.mask_dlabel) (in module mcutils.scripts.MDE.btensor) (in module mcutils.scripts.MDE.fit_dispersion) (in module mcutils.scripts.MDE.generate_data) (in module mcutils.scripts.non_central_chi.variance) (in module mcutils.scripts.parcel.cluster) (in module mcutils.scripts.parcel.combine) (in module mcutils.scripts.parcel.random) (in module mcutils.scripts.parcel.spectral) (in module mcutils.scripts.plot.scatter_dconn) (in module mcutils.scripts.plot.scatter_dscalar) (in module mcutils.scripts.plot.scatter_gifti) (in module mcutils.scripts.round_bvals) (in module mcutils.scripts.sidecar.merge) (in module mcutils.scripts.split.merge) (in module mcutils.scripts.split.run) (in module mcutils.scripts.split.submit) (in module mcutils.scripts.surface.from_mask) (in module mcutils.scripts.surface.from_ridge) (in module mcutils.scripts.surface.gradient) (in module mcutils.scripts.surface.roi_dist_gifti) (in module mcutils.scripts.surface.watershed) (in module mcutils.scripts.to_dataframe_tree) (mcutils.pipe.Pipeline method) (mcutils.pipe.ScriptRun method)

run_array() (in module mcutils.scripts.parcel.discretise) run_from_args() (in module mcutils.scripts.bibtex.query) (in module mcutils.scripts.bibtex.update) (in module mcutils.scripts.cifti.convert) (in module mcutils.scripts.cifti.correlate) (in module mcutils.scripts.cifti.ptx2dconn) (in module mcutils.scripts.cifti.smooth) (in module mcutils.scripts.function.normalize) (in module mcutils.scripts.iter_link) (in module mcutils.scripts.mask_dlabel) (in module mcutils.scripts.MDE.btensor) (in module mcutils.scripts.MDE.fit_dispersion) (in module mcutils.scripts.MDE.generate_data) (in module mcutils.scripts.MDE.micro_anisotropy) (in module mcutils.scripts.MDE.spherical_mean) (in module mcutils.scripts.merge_hcp) (in module mcutils.scripts.non_central_chi.correct) (in module mcutils.scripts.non_central_chi.variance) (in module mcutils.scripts.parcel.cluster) (in module mcutils.scripts.parcel.combine) (in module mcutils.scripts.parcel.discretise) (in module mcutils.scripts.parcel.random) (in module mcutils.scripts.parcel.spectral) (in module mcutils.scripts.plot.scatter_dconn) (in module mcutils.scripts.plot.scatter_dscalar) (in module mcutils.scripts.plot.scatter_gifti) (in module mcutils.scripts.ptx.select_vertex) (in module mcutils.scripts.round_bvals) (in module mcutils.scripts.sidecar.index) (in module mcutils.scripts.split.merge) (in module mcutils.scripts.split.submit) (in module mcutils.scripts.surface.from_mask) (in module mcutils.scripts.surface.from_ridge) (in module mcutils.scripts.surface.gradient) (in module mcutils.scripts.surface.roi_dist_gifti) (in module mcutils.scripts.surface.smooth) (in module mcutils.scripts.surface.watershed) (in module mcutils.scripts.to_dataframe) (in module mcutils.scripts.to_dataframe_tree) (in module mcutils.scripts.tree.extract) (in module mcutils.scripts.tree.from_jal) run_multi() (in module mcutils.scripts.MDE.spherical_mean) run_nparcels() (in module mcutils.scripts.surface.watershed) run_script() (in module mcutils.utils.scripts) run_single() (in module mcutils.scripts.MDE.spherical_mean) run_single_shell() (in module mcutils.scripts.MDE.micro_anisotropy)

S

Scene (class in mcutils.utils.wb_scene) Script (class in mcutils.pipe) ScriptDirectory (class in mcutils.utils.scripts) ScriptRun (class in mcutils.pipe) setdefault() (mcutils.utils.sidecar.AcquisitionParams method) setup_log() (in module mcutils.utils.log) signal() (mcutils.scripts.MDE.generate_data.Tissue method) single() (mcutils.scripts.MDE.fit_dispersion.Fitter method) single_rotmat() (in module mcutils.utils.spherical) smooth() (in module mcutils.scripts.cifti.smooth) smooth_cifti() (in module mcutils.scripts.cifti.smooth) sparse_min() (in module mcutils.scripts.surface.roi_dist_gifti) spherical2cart() (in module mcutils.utils.spherical)

SPHModel (class in mcutils.scripts.MDE.spherical_mean) stack() (in module mcutils.utils.greyordinate) stick_dispersion() (in module mcutils.scripts.MDE.fit_dispersion) streamlit() (mcutils.pipe.Pipeline method) sub_sample() (in module mcutils.scripts.plot.scatter_dconn) submit() (mcutils.pipe.ScriptRun method) SubmitParams (class in mcutils.pipe) surface() (mcutils.utils.greyordinate.GreyOrdinates method) surface_arr_in() (in module mcutils.utils.scripts) surface_in() (in module mcutils.utils.scripts) surface_label_in() (in module mcutils.utils.scripts) swap_dispersion() (in module mcutils.scripts.MDE.fit_dispersion) sync() (in module mcutils.sync) sync_tree() (in module mcutils.scripts.tree.from_jal)

T

Target (class in mcutils.pipe) Tissue (class in mcutils.scripts.MDE.generate_data) to_cifti() (mcutils.utils.greyordinate.GreyOrdinates method) to_filename() (mcutils.utils.greyordinate.GreyOrdinates method) to_hdf5() (in module mcutils.utils.cifti) (mcutils.utils.greyordinate.GreyOrdinates method)

to_json() (mcutils.utils.sidecar.AcquisitionParams method) to_mat() (mcutils.utils.sidecar.AcquisitionParams method) to_nifti() (in module mcutils.scripts.to_dataframe) to_pandas() (mcutils.utils.sidecar.AcquisitionParams method) to_string() (mcutils.utils.scripts.ScriptDirectory method) transpose() (mcutils.utils.greyordinate.GreyOrdinates method) true_snr() (in module mcutils.scripts.non_central_chi.variance)

U

uniform_centroids() (in module mcutils.scripts.parcel.random) update() (mcutils.pipe.SubmitParams method) (mcutils.utils.sidecar.AcquisitionParams method) update_centers() (in module mcutils.utils.kmedoids)

update_labels() (in module mcutils.utils.kmedoids) update_pmids() (in module mcutils.scripts.bibtex.update) usage() (in module mcutils.scripts.sidecar.merge) (in module mcutils.scripts.split.run)

V

values() (mcutils.utils.sidecar.AcquisitionParams method) vector_der_hyp_Sapprox() (in module mcutils.utils.hypergeometry)

vector_hyp_Sapprox() (in module mcutils.utils.hypergeometry) volume() (mcutils.utils.greyordinate.GreyOrdinates method) volume_in() (in module mcutils.utils.scripts)

W

write() (in module mcutils.utils.cifti) (mcutils.utils.sidecar.AcquisitionParams method) (mcutils.utils.wb_scene.Scene method)

write_gifti() (in module mcutils.utils.write_gifti)

Z

zepp_to_signal() (in module mcutils.scripts.MDE.fit_dispersion)