ScriptRun

Import in python using from mcutils.pipe import ScriptRun

Documentation

class mcutils.pipe.ScriptRun(script: mcutils.pipe.Script, variables)[source]

Single call of the script with a set of variables

__init__(script: mcutils.pipe.Script, variables)[source]

Represents a single potential run of the Script

Parameters

  • script – parent script

  • variables – variable values to use when running the script

Methods

add_to_graph(graph[, upwards])

Adds ScriptRun to the graph

as_dask([overwrite, overwrite_dependencies, …])

Schedules this script and its dependencies on dask

dependencies()

Find all the dependencies

get_kwargs()

return

Keyword arguments needed to provide all the filenames & variable values when calling script

input_exists([error])

Checks whether all input files already exist on disk

make_output_directories()

missing([overwrite, overwrite_dependencies])

Finds any missing input files that will prevent this script from running

output_exists([error])

Checks whether all output files already exist on disk

provides_iter()

requires_iter()

run([overwrite, overwrite_dependencies])

Runs this script and its dependencies in sequence

submit([overwrite, overwrite_dependencies])

Submits this script and its dependencies to the cluster

Attributes

allow_missing

expected