pipe

Documentation

Functions

generates(names[, submit_params, glob_vars])	Wraps a function to be submitted to the cluster
iter_filenames(tree, short_name, iter_values)	Iterate over all possible filenames for given short_name

Classes

Pipeline(tree, all_values[, parents])	Pipeline function containing one or more scripts
Script(pipeline, func, in_files, out_files)
ScriptRun(script, variables)	Single call of the script with a set of variables
SubmitParams([minutes, queue, architecture, …])	Represents the fsl_sub parameters
Target(filename)	Object to store for each filename which ScriptRun is used to produce it

Exceptions

DependencyError

Raise when dependencies are missing