Pipeline

Import in python using from mcutils.pipe import Pipeline

Documentation

class mcutils.pipe.Pipeline(tree: fsl.utils.filetree.filetree.FileTree, all_values, parents=None)

Pipeline function containing one or more scripts

__init__(tree: fsl.utils.filetree.filetree.FileTree, all_values, parents=None)

Creates a new pipeline to generate the files in tree

Parameters

• tree – Templates for the input/output filenames

• all_values – All possible values that the variables in the tree templates can take

• parents – Parent pipeline that might produce some of the dependencies

Methods

add(script)	Adds a script to the pipeline
cli([description])	Runs the pipeline from the command line
get_graph_filenames(filenames)
get_target(filename)	Finds the target describing how filename gets produced
print_missing_runs(filenames, all_short_names)
run([short_name, catch, overwrite, …])	Generates all files matching the short_name and variables
streamlit([title])