MDE generate_data

Usage

Run using mc_script MDE generate_data after installation or using ~ndcn0236/bin/mc_script MDE generate_data on jalapeno.

Import in python using from mcutils.scripts.MDE import generate_data

Documentation

Module to generate fake mutiple diffusion encoding data under the Gaussian assumption

Functions

get_bmat([LTE, PTE, STE])	Which b-matrices to include in acquisition
run(multi_tissue[, bval, PTE])	Generates signal from the signal generator

CLI interface

add_to_parser(parser)	Creates the parser of the command line arguments
run_from_args(args)	Runs the script based on a Namespace containing the command line arguments

Classes

Generator(tissues, log_k1, log_k2)
Tissue(volume_fraction, d_axial, d_radial)