cifti ptx2dconn

Usage

Run using mc_script cifti ptx2dconn after installation or using ~ndcn0236/bin/mc_script cifti ptx2dconn on jalapeno.

Import in python using from mcutils.scripts.cifti import ptx2dconn

Documentation

Converts probtrackX to dconn

Functions

dot2matrix(dot_file)	Converts a fdt_matrix3.dot file into a sparse matrix
get_brain_model(filename[, assumed_hemis])	Creates a CIFTI BrainModel axis based on the provided file
read_ascii(filename[, assumed_hemi])	Reads a surface stores as an ASCII file
run(output_file, dot_file, brain_model[, …])	Creates a greyordinate object with the matrix data stored on disk

CLI interface

add_to_parser(parser)
run_from_args(args)