MDE spherical_mean

Usage

Run using mc_script MDE spherical_mean after installation or using ~ndcn0236/bin/mc_script MDE spherical_mean on jalapeno.

Import in python using from mcutils.scripts.MDE import spherical_mean

Documentation

Computes spherical mean signal

Functions

fit_sph_harm(diffusion_data, bvecs[, order])	Fits spherical harmonics to the diffusion data
read_bvecs(filename)
run_multi(diffusion_img, indices[, method, …])	Computes the spherical mean for each b-value
run_single(diffusion_img[, method, bvecs, order])	Computes the mean across a diffusion image

CLI interface

add_to_parser(parser)
run_from_args(args)

Classes

SPHModel(data, bvecs[, order])

Fits the diffusion data with spherical harmonics