cudimot

Import in python using from mcutils.cudimot import cudimot

mcutils.cudimot.cudimot(directory_or_tree, data_file, mask_file, cfp=(), fixp=(), model_name=None, njobs=4, cudimot_dir=None, wait_for=(), overwrite=True, optional_flags='')[source]

Runs or submits the job to fit the given model

Parameters

  • directory_or_tree – directory that will contain the output files or tree with CUDIMOT input/output files

  • data_file – path to the data file (or short name in tree)

  • mask_file – path to the mask file (or short name in tree)

  • cfp – sequence of filenames or short names with common fixed parameters

  • fixp – sequence of filenames or short names with voxel-wise fixed parameters

  • model_name – which model to fit (defaults to tree.variables[‘model_name’])

  • njobs – number of jobs to split the data into

  • cudimot_dir – directory where CUDIMOT has been installed (defaults to $FSLDEVDIR)

  • wait_for – tuple of job ids that cudimot should wait for

  • overwrite – overwrites the output even if it already exists

  • optional_flags – string with all optional flags

Returns

tuple with job ids to wait for