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NEWIMAGE::volume Class Template Reference

#include <newimage.h>

Inheritance diagram for NEWIMAGE::volume:

Collaboration diagram for NEWIMAGE::volume:[legend]List of all members.

Public Types

typedef const T * fast_const_iterator

Public Methods

volume ()
volume (const volume< T > &source)
volume (int xsize, int ysize, int zsize)
volume (int xsize, int ysize, int zsize, T *d, bool d_owner)
~volume ()
void destroy ()
const volume< T > & operator= (const volume< T > &source)
int reinitialize (const volume< T > &source)
int reinitialize (int xsize, int ysize, int zsize)
int reinitialize (int xsize, int ysize, int zsize, T *d, bool d_owner)
int copyproperties (const volume< T > &source)
int copydata (const volume< T > &source)
int xsize () const
int ysize () const
int zsize () const
float xdim () const
float ydim () const
float zdim () const
const int xsign (void) const
const int ysign (void) const
const int zsign (void) const
void setxdim (float x)
void setydim (float y)
void setzdim (float z)
void setdims (float x, float y, float z)
int nvoxels () const
const std::vector< int > & limits () const
int limits (int n) const
int minx () const
int maxx () const
int miny () const
int maxy () const
int minz () const
int maxz () const
const std::vector< int > & ROIlimits () const
int ROIlimits (int n) const
bool usingROI () const
void setROIlimits (int x0, int y0, int z0, int x1, int y1, int z1) const
void setROIlimits (const std::vector< int > &lims) const
void activateROI () const
void deactivateROI () const
volume< T > ROI () const
int copyROIonly (const volume< T > &source)
Matrix sampling_mat () const
const ColumnVector & getorigin () const
void setorigin (const ColumnVector &orig) const
void setorigin (float x, float y, float z) const
T min () const
T max () const
float sum () const
float sumsquares () const
float mean () const
float variance () const
float stddev () const
T robustmin () const
T robustmax () const
ColumnVector principleaxis (int n) const
Matrix principleaxes_mat () const
T percentile (float pvalue) const
std::vector< float > percentilepvalues () const
ColumnVector histogram (int nbins) const
ColumnVector histogram (int nbins, T minval, T maxval) const
int histbins () const
T histmin () const
T histmax () const
fast_const_iterator fbegin () const
fast_const_iterator fend () const
bool in_bounds (int x, int y, int z) const
T & operator() (int x, int y, int z)
const T & operator() (int x, int y, int z) const
float interpolate (float x, float y, float z) const
T & value (int x, int y, int z)
const T & value (int x, int y, int z) const
float interpolatevalue (float x, float y, float z) const
void setextrapolationmethod (extrapolation extrapmethod) const
extrapolation getextrapolationmethod () const
void setpadvalue (T padval) const
T getpadvalue () const
void defineuserextrapolation (T(*extrap)(const volume< T > &, int, int, int)) const
void setinterpolationmethod (interpolation interpmethod) const
interpolation getinterpolationmethod () const
void defineuserinterpolation (float(*interp)(const volume< T > &, float, float, float)) const
void definekernelinterpolation (const ColumnVector &kx, const ColumnVector &ky, const ColumnVector &kz, int wx, int wy, int wz) const
void definekernelinterpolation (const volume< T > &vol) const
void definesincinterpolation (const string &sincwindowtype, int w, int nstore=1201) const
void definesincinterpolation (const string &sincwindowtype, int wx, int wy, int wz, int nstore=1201) const
void getneighbours (int x, int y, int z, T &v000, T &v001, T &v010, T &v011, T &v100, T &v101, T &v110, T &v111) const
void getneighbours (int x, int y, int z, T &v000, T &v010, T &v100, T &v110) const
T operator= (T val)
const volume< T > & operator+= (T val)
const volume< T > & operator-= (T val)
const volume< T > & operator *= (T val)
const volume< T > & operator/= (T val)
const volume< T > & operator+= (const volume< T > &source)
const volume< T > & operator-= (const volume< T > &source)
const volume< T > & operator *= (const volume< T > &source)
const volume< T > & operator/= (const volume< T > &source)
volume< T > operator+ (T num) const
volume< T > operator- (T num) const
volume< T > operator * (T num) const
volume< T > operator/ (T num) const
volume< T > operator+ (const volume< T > &vol2) const
volume< T > operator- (const volume< T > &vol2) const
volume< T > operator * (const volume< T > &vol2) const
volume< T > operator/ (const volume< T > &vol2) const
void binarise (T lowerth, T upperth)
void binarise (T thresh)
void threshold (T lowerth, T upperth)
void threshold (T thresh)
void swapdimensions (int dim1, int dim2, int dim3)

Public Attributes

lazy< T, volume< T > > backgroundval
lazy< ColumnVector, volume<
T > > cog

Friends

template<class S, class D> void copybasicproperties (const volume< S > &source, volume< D > &dest)
template<class S> volume< S > operator+ (S num, const volume< S > &vol)
template<class S> volume< S > operator- (S num, const volume< S > &vol)
template<class S> volume< S > operator * (S num, const volume< S > &vol)
template<class S> volume< S > operator/ (S num, const volume< S > &vol)
template<class S, class D> void copyconvert (const volume< S > &source, volume< D > &dest)

template<class T>
class NEWIMAGE::volume< T >

Member Typedef Documentation

template<class T>

typedef const T* NEWIMAGE::volume::fast_const_iterator

Constructor & Destructor Documentation

template<class T>

NEWIMAGE::volume< T >::volume ( )

template<class T>

NEWIMAGE::volume< T >::volume ( const volume< T > & source )

template<class T>

NEWIMAGE::volume< T >::volume ( int xsize,

int ysize,

int zsize

)

template<class T>

NEWIMAGE::volume< T >::volume ( int xsize,

int ysize,

int zsize,

T * d,

bool d_owner

)

template<class T>

NEWIMAGE::volume< T >::~volume ( )

Member Function Documentation

template<class T>

void NEWIMAGE::volume< T >::activateROI ( ) const

template<class T>

void NEWIMAGE::volume< T >::binarise ( T thresh ) [inline]

template<class T>

void NEWIMAGE::volume< T >::binarise ( T lowerth,

T upperth

)

template<class T>

int NEWIMAGE::volume< T >::copydata ( const volume< T > & source )

template<class T>

int NEWIMAGE::volume< T >::copyproperties ( const volume< T > & source )

template<class T>

int NEWIMAGE::volume< T >::copyROIonly ( const volume< T > & source )

template<class T>

void NEWIMAGE::volume< T >::deactivateROI ( ) const

template<class T>

void NEWIMAGE::volume< T >::definekernelinterpolation ( const volume< T > & vol ) const

template<class T>

void NEWIMAGE::volume< T >::definekernelinterpolation ( const ColumnVector & kx,

const ColumnVector & ky,

const ColumnVector & kz,

int wx,

int wy,

int wz

) const

template<class T>

void NEWIMAGE::volume< T >::definesincinterpolation ( const string & sincwindowtype,

int wx,

int wy,

int wz,

int nstore = 1201

) const

template<class T>

void NEWIMAGE::volume< T >::definesincinterpolation ( const string & sincwindowtype,

int w,

int nstore = 1201

) const

template<class T>

void NEWIMAGE::volume< T >::defineuserextrapolation ( T(* extrap)(const volume< T > &, int, int, int) ) const

template<class T>

void NEWIMAGE::volume< T >::defineuserinterpolation ( float(* interp)(const volume< T > &, float, float, float) ) const

template<class T>

void NEWIMAGE::volume< T >::destroy ( )

template<class T>

fast_const_iterator NEWIMAGE::volume< T >::fbegin ( ) const [inline]

template<class T>

fast_const_iterator NEWIMAGE::volume< T >::fend ( ) const [inline]

template<class T>

extrapolation NEWIMAGE::volume< T >::getextrapolationmethod ( ) const [inline]

template<class T>

interpolation NEWIMAGE::volume< T >::getinterpolationmethod ( ) const [inline]

template<class T>

void NEWIMAGE::volume< T >::getneighbours ( int x,

int y,

int z,

T & v000,

T & v010,

T & v100,

T & v110

) const [inline]

template<class T>

void NEWIMAGE::volume< T >::getneighbours ( int x,

int y,

int z,

T & v000,

T & v001,

T & v010,

T & v011,

T & v100,

T & v101,

T & v110,

T & v111

) const [inline]

template<class T>

const ColumnVector& NEWIMAGE::volume< T >::getorigin ( ) const [inline]

template<class T>

T NEWIMAGE::volume< T >::getpadvalue ( ) const [inline]

template<class T>

int NEWIMAGE::volume< T >::histbins ( ) const [inline]

template<class T>

T NEWIMAGE::volume< T >::histmax ( ) const [inline]

template<class T>

T NEWIMAGE::volume< T >::histmin ( ) const [inline]

template<class T>

ColumnVector NEWIMAGE::volume< T >::histogram ( int nbins,

T minval,

T maxval

) const

template<class T>

ColumnVector NEWIMAGE::volume< T >::histogram ( int nbins ) const

template<class T>

bool NEWIMAGE::volume< T >::in_bounds ( int x,

int y,

int z

) const [inline]

template<class T>

float NEWIMAGE::volume< T >::interpolate ( float x,

float y,

float z

) const

template<class T>

float NEWIMAGE::volume< T >::interpolatevalue ( float x,

float y,

float z

) const

template<class T>

int NEWIMAGE::volume< T >::limits ( int n ) const [inline]

template<class T>

const std::vector<int>& NEWIMAGE::volume< T >::limits ( ) const [inline]

template<class T>

T NEWIMAGE::volume< T >::max ( ) const [inline]

template<class T>

int NEWIMAGE::volume< T >::maxx ( ) const [inline]

template<class T>

int NEWIMAGE::volume< T >::maxy ( ) const [inline]

template<class T>

int NEWIMAGE::volume< T >::maxz ( ) const [inline]

template<class T>

float NEWIMAGE::volume< T >::mean ( ) const [inline]

template<class T>

T NEWIMAGE::volume< T >::min ( ) const [inline]

template<class T>

int NEWIMAGE::volume< T >::minx ( ) const [inline]

template<class T>

int NEWIMAGE::volume< T >::miny ( ) const [inline]

template<class T>

int NEWIMAGE::volume< T >::minz ( ) const [inline]

template<class T>

int NEWIMAGE::volume< T >::nvoxels ( ) const [inline]

template<class T>

volume< T > NEWIMAGE::volume< T >::operator * ( const volume< T > & vol2 ) const

template<class T>

volume< T > NEWIMAGE::volume< T >::operator * ( T num ) const

template<class T>

const volume< T > & NEWIMAGE::volume< T >::operator *= ( const volume< T > & source )

template<class T>

const volume< T > & NEWIMAGE::volume< T >::operator *= ( T val )

template<class T>

const T& NEWIMAGE::volume< T >::operator() ( int x,

int y,

int z

) const [inline]

template<class T>

T& NEWIMAGE::volume< T >::operator() ( int x,

int y,

int z

) [inline]

template<class T>

volume< T > NEWIMAGE::volume< T >::operator+ ( const volume< T > & vol2 ) const

template<class T>

volume< T > NEWIMAGE::volume< T >::operator+ ( T num ) const

template<class T>

const volume< T > & NEWIMAGE::volume< T >::operator+= ( const volume< T > & source )

template<class T>

const volume< T > & NEWIMAGE::volume< T >::operator+= ( T val )

template<class T>

volume< T > NEWIMAGE::volume< T >::operator- ( const volume< T > & vol2 ) const

template<class T>

volume< T > NEWIMAGE::volume< T >::operator- ( T num ) const

template<class T>

const volume< T > & NEWIMAGE::volume< T >::operator-= ( const volume< T > & source )

template<class T>

const volume< T > & NEWIMAGE::volume< T >::operator-= ( T val )

template<class T>

volume< T > NEWIMAGE::volume< T >::operator/ ( const volume< T > & vol2 ) const

template<class T>

volume< T > NEWIMAGE::volume< T >::operator/ ( T num ) const

template<class T>

const volume< T > & NEWIMAGE::volume< T >::operator/= ( const volume< T > & source )

template<class T>

const volume< T > & NEWIMAGE::volume< T >::operator/= ( T val )

template<class T>

T NEWIMAGE::volume< T >::operator= ( T val )

template<class T>

const volume< T > & NEWIMAGE::volume< T >::operator= ( const volume< T > & source )

template<class T>

T NEWIMAGE::volume< T >::percentile ( float pvalue ) const

template<class T>

std::vector<float> NEWIMAGE::volume< T >::percentilepvalues ( ) const [inline]

template<class T>

Matrix NEWIMAGE::volume< T >::principleaxes_mat ( ) const

template<class T>

ColumnVector NEWIMAGE::volume< T >::principleaxis ( int n ) const

template<class T>

int NEWIMAGE::volume< T >::reinitialize ( int xsize,

int ysize,

int zsize,

T * d,

bool d_owner

)

template<class T>

int NEWIMAGE::volume< T >::reinitialize ( int xsize,

int ysize,

int zsize

)

template<class T>

int NEWIMAGE::volume< T >::reinitialize ( const volume< T > & source )

template<class T>

T NEWIMAGE::volume< T >::robustmax ( ) const [inline]

template<class T>

T NEWIMAGE::volume< T >::robustmin ( ) const [inline]

template<class T>

volume< T > NEWIMAGE::volume< T >::ROI ( ) const

template<class T>

int NEWIMAGE::volume< T >::ROIlimits ( int n ) const [inline]

template<class T>

const std::vector<int>& NEWIMAGE::volume< T >::ROIlimits ( ) const [inline]

template<class T>

Matrix NEWIMAGE::volume< T >::sampling_mat ( ) const

template<class T>

void NEWIMAGE::volume< T >::setdims ( float x,

float y,

float z

) [inline]

template<class T>

void NEWIMAGE::volume< T >::setextrapolationmethod ( extrapolation extrapmethod ) const [inline]

template<class T>

void NEWIMAGE::volume< T >::setinterpolationmethod ( interpolation interpmethod ) const

template<class T>

void NEWIMAGE::volume< T >::setorigin ( float x,

float y,

float z

) const [inline]

template<class T>

void NEWIMAGE::volume< T >::setorigin ( const ColumnVector & orig ) const [inline]

template<class T>

void NEWIMAGE::volume< T >::setpadvalue ( T padval ) const [inline]

template<class T>

void NEWIMAGE::volume< T >::setROIlimits ( const std::vector< int > & lims ) const

template<class T>

void NEWIMAGE::volume< T >::setROIlimits ( int x0,

int y0,

int z0,

int x1,

int y1,

int z1

) const

template<class T>

void NEWIMAGE::volume< T >::setxdim ( float x ) [inline]

template<class T>

void NEWIMAGE::volume< T >::setydim ( float y ) [inline]

template<class T>

void NEWIMAGE::volume< T >::setzdim ( float z ) [inline]

template<class T>

float NEWIMAGE::volume< T >::stddev ( ) const [inline]

template<class T>

float NEWIMAGE::volume< T >::sum ( ) const [inline]

template<class T>

float NEWIMAGE::volume< T >::sumsquares ( ) const [inline]

template<class T>

void NEWIMAGE::volume< T >::swapdimensions ( int dim1,

int dim2,

int dim3

)

template<class T>

void NEWIMAGE::volume< T >::threshold ( T thresh ) [inline]

template<class T>

void NEWIMAGE::volume< T >::threshold ( T lowerth,

T upperth

)

template<class T>

bool NEWIMAGE::volume< T >::usingROI ( ) const [inline]

template<class T>

const T& NEWIMAGE::volume< T >::value ( int x,

int y,

int z

) const [inline]

template<class T>

T& NEWIMAGE::volume< T >::value ( int x,

int y,

int z

) [inline]

template<class T>

float NEWIMAGE::volume< T >::variance ( ) const [inline]

template<class T>

float NEWIMAGE::volume< T >::xdim ( ) const [inline]

template<class T>

const int NEWIMAGE::volume< T >::xsign ( void ) const [inline]

template<class T>

int NEWIMAGE::volume< T >::xsize ( ) const [inline]

template<class T>

float NEWIMAGE::volume< T >::ydim ( ) const [inline]

template<class T>

const int NEWIMAGE::volume< T >::ysign ( void ) const [inline]

template<class T>

int NEWIMAGE::volume< T >::ysize ( ) const [inline]

template<class T>

float NEWIMAGE::volume< T >::zdim ( ) const [inline]

template<class T>

const int NEWIMAGE::volume< T >::zsign ( void ) const [inline]

template<class T>

int NEWIMAGE::volume< T >::zsize ( ) const [inline]

Friends And Related Function Documentation

template<class T>

template<class S, class D>

void copybasicproperties ( const volume< S > & source,

volume< D > & dest

) [friend]

template<class T>

template<class S, class D>

void copyconvert ( const volume< S > & source,

volume< D > & dest

) [friend]

template<class T>

template<class S>

volume<S> operator * ( S num,

const volume< S > & vol

) [friend]

template<class T>

template<class S>

volume<S> operator+ ( S num,

const volume< S > & vol

) [friend]

template<class T>

template<class S>

volume<S> operator- ( S num,

const volume< S > & vol

) [friend]

template<class T>

template<class S>

volume<S> operator/ ( S num,

const volume< S > & vol

) [friend]

Member Data Documentation

template<class T>

lazy<T, volume<T> > NEWIMAGE::volume::backgroundval

template<class T>

lazy<ColumnVector, volume<T> > NEWIMAGE::volume::cog

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