Stephen M. Smith

Bibliography

1

S.M. Smith, N. De Stefano, M. Jenkinson, and P.M. Matthews.
Normalised accurate measurement of longitudinal brain change.
Journal of Computer Assisted Tomography, 25(3):466-475, May/June 2001.

2

M.W. Woolrich, B.D. Ripley, J.M. Brady, and S.M. Smith.
Temporal autocorrelation in univariate linear modelling of FMRI data.
NeuroImage, 2001.
in publication.

3

Y. Zhang, M. Brady, and S. Smith.
Segmentation of brain MR images through a hidden Markov random field model and the expectation maximization algorithm.
IEEE Trans. on Medical Imaging, 20(1):45-57, 2001.

4

M. Jenkinson and S.M. Smith.
A global optimisation method for robust affine registration of brain images.
Medical Image Analysis, 5(2):143-156, June 2001.

5

R. Pineiro, S.T. Pendlebury, S. Smith, D. Flitney, A.M. Blamire, P. Styles, and P.M. Matthews.
Relating MRI changes to motor deficit after ischemic stroke by segmentation of functional motor pathways.
Stroke, 31(1):672-9, March 2000.

6

P.M. Hayton, M. Brady, S.M. Smith, and N. Moore.
A non-rigid registration algorithm for dynamic breast MR images.
Artificial Intelligence, 114:125-156, 1999.

7

M.A. Lee, S. Smith, J. Palace, S. Narayanan, N. Silver, L. Minicucci, M. Filippi, D.H. Miller, D.L. Arnold, and P.M. Matthews.
Spatial mapping of T2 and gadolinium-enhancing T1 lesion volumes in MS: Evidence for distinct mechanisms of lesion genesis?
Brain, 122:1261-1270, 1999.

8

M.A. Lee, S. Smith, J. Palace, and P.M. Matthews.
Defining multiple sclerosis disease activity using MRI T$_2$-weighted difference imaging.
Brain, 121:2095--2102, 1998.

9

S.M. Smith and J.M. Brady.
SUSAN - a new approach to low level image processing.
International Journal of Computer Vision, 23(1):45-78, May 1997.

10

S.M. Smith.
ASSET-2: Real-time motion segmentation and object tracking.
Journal of Real Time Imaging, 4(1):21-40, 1998.

11

S.M. Smith.
Obstacle avoidance techniques for land vehicles.
Journal of Defence Science, 1(3):378-387, July 1996.

12

S.M. Smith.
ALTRUISM: Interpretation of three-dimensional information for autonomous vehicle control.
Engineering Applications of Artificial Intelligence, 8(3):271-280, 1995.

13

S.M. Smith and J.M. Brady.
ASSET-2: Real-time motion segmentation and shape tracking.
IEEE Trans. on Pattern Analysis and Machine Intelligence, 17(8):814-820, 1995.

14

S.M. Smith and J.M. Brady.
A scene segmenter; visual tracking of moving vehicles.
Engineering Applications of Artificial Intelligence, 7(2):191-204, April 1994.

15

S.M. Smith.
Note on small angle approximations for stereo disparity.
Image and Vision Computing, 11(6), July 1993.

16

D. Sinclair, A. Blake, S. Smith, and C. Rothwell.
Planar region detection and motion recovery.
Image and Vision Computing, 11(4):229-234, May 1993.

17

P. Jezzard, P.M. Matthews, and S.M. Smith, editors.
Functional MRI: An Introduction to Methods.
OUP, Oxford, 2001.

18

S.M. Smith.
Overview of fMRI analysis.
In P. Jezzard, P.M. Matthews, and S.M. Smith, editors, Functional MRI: An Introduction to Methods. OUP, Oxford, 2001.

19

S.M. Smith.
Preparing fMRI data for statistical analysis.
In P. Jezzard, P.M. Matthews, and S.M. Smith, editors, Functional MRI: An Introduction to Methods. OUP, Oxford, 2001.

20

M. Jenkinson and S.M. Smith.
The role of registration in functional magnetic resonance imaging.
In J. Hajnal, D.J. Hawkes, and D. Hill, editors, Medical Image Registration. CRC Press, 2001.

21

J.M. Brady, P.M. Hayton, and S.M. Smith.
Method and apparatus for image processing (subject: analysis of breast MRI data), 1999.
Patent Application No. 9906420.6, 19 March 1999.

22

S.M. Smith.
Method for digitally processing images to determine the position of edges and/or corners therein for guidance of unmanned vehicle.
UK Patent 2272285. Proprietor: Secretary of State for Defence, UK. 15 January 1997.

23

S.M. Smith.
Feature Based Image Sequence Understanding.
D.Phil. thesis, Robotics Research Group, Department of Engineering Science, Oxford University, 1992.

24

J.E. Adcock, S.M. Smith, and P.M. Matthews.
Comparison of FMRI with the Wada test for lateralisation of language in pre-surgical epilepsy patients.
In Seventh Int. Conf. on Functional Mapping of the Human Brain, 2001.

25

S. Bantick, R. Wise, A. Ploghaus, S. Clare, S. Smith, and I. Tracey.
Imaging the attentional modulation of pain in humans using FMRI.
In Seventh Int. Conf. on Functional Mapping of the Human Brain, 2001.

26

C.F. Beckmann, J.A. Noble, and S.M. Smith.
Spatio-temporal accuracy of ICA for FMRI.
In Seventh Int. Conf. on Functional Mapping of the Human Brain, 2001.

27

C.F. Beckmann, J.A. Noble, and S.M. Smith.
Investigating the intrinsic dimensionality of FMRI data for ICA.
In Seventh Int. Conf. on Functional Mapping of the Human Brain, 2001.

28

S. Fu, P. Matthews, Y. Chen, S. Iversen, S. Clare, P. Hobden, A. Magill, P. Jezzard, S. Smith, and I. Tracey.
A parametric approach to Chinese character and pinyin reading using fMRI.
In Seventh Int. Conf. on Functional Mapping of the Human Brain, 2001.

29

S. Fu, Y. Chen, S. Iversen, P. Hobden, P. Jezzard, S. Smith, I. Tracey, and P. Matthews.
Semantic and phonological processing in Chinese character reading: a fMRI study.
In Seventh Int. Conf. on Functional Mapping of the Human Brain, 2001.

30

D. Hall, M. Goncalves, S. Smith, P. Jezzard, M. Jenkinson, and M. Haggard.
Venous contribution to high magnitude BOLD contrast activation.
In Seventh Int. Conf. on Functional Mapping of the Human Brain, 2001.

31

H. Johansen-Berg, V. Christensen, M. Woolrich, and P.M. Matthews.
Attention to touch modulates activity in both primary and secondary somatosensory areas.
Neuroreport, 11(6):1237--41, April 2000.

32

D.G. Leibovici and S. Smith.
Min-max filter for multi-subject analysis.
In Seventh Int. Conf. on Functional Mapping of the Human Brain, 2001.

33

C. Olivers, S. Smith, P. Matthews, and G. Humphreys.
The brain areas underlying visual marking: An event-related fMRI study.
In Seventh Int. Conf. on Functional Mapping of the Human Brain, 2001.

34

S. Smith, P. Bannister, C. Beckmann, M. Brady, S. Clare, D. Flitney, P. Hansen, M. Jenkinson, D. Leibovici, B. Ripley, M Woolrich, and Y. Zhang.
FSL: New tools for functional and structural brain image analysis.
In Seventh Int. Conf. on Functional Mapping of the Human Brain, 2001.

35

S. Smith, Y. Zhang, M. Jenkinson, P.M. Matthews, and N. De Stefano.
SIENA: single and multiple time point brain atrophy analysis.
In Seventh Int. Conf. on Functional Mapping of the Human Brain, 2001.

36

R. Wise, R. Rogers, S. Clare, S. Bantick, A. Ploghaus, S. Smith, P. Williams, G. Rapeport, and I. Tracey.
Identifying which brain areas activated by painful stimulation are specifically modulated by drugs.
In Proc. Int. Soc. of Magnetic Resonance in Medicine, 2001.

37

R. Wise, R. Rogers, S. Bantick, A. Ploghaus, S. Smith, P. Williams, G. Rapeport, and I. Tracey.
An FMRI method to determine specific drug-induced modulations of functional activations using a pharmacokinetic model.
In Seventh Int. Conf. on Functional Mapping of the Human Brain, 2001.

38

M. Woolrich, M. Brady, and S.M. Smith.
Hierarchical fully Bayesian spatio-temporal analysis of FMRI data.
In Seventh Int. Conf. on Functional Mapping of the Human Brain, 2001.

39

Y. Zhang, M. Brady, and S. Smith.
A statistical framework for automatic brain MR image segmentation.
In Seventh Int. Conf. on Functional Mapping of the Human Brain, 2001.

40

Y. Zhang, M. Brady, and S. Smith.
A hidden Markov random field model for partial volume classification.
In Seventh Int. Conf. on Functional Mapping of the Human Brain, 2001.

41

M. Alecci, Y. Zhang, J.M. Brady, P. Jezzard, and S. Smith.
Image-based evaluation of a-priori B1 field correction and its effect on MRI tissue segmentation.
In Proc. Int. Soc. of Magnetic Resonance in Medicine, page 109, 2000.

42

P. R. Bannister, D. Flitney, M. Woolrich, and S. Smith.
Lowpass temporal filtering in fMRI time series.
In Sixth Int. Conf. on Functional Mapping of the Human Brain, page 658, 2000.

43

C.F. Beckmann, I. Tracey, J.A. Noble, and S.M. Smith.
Combining ICA and GLM: A hybrid approach to FMRI analysis.
In Sixth Int. Conf. on Functional Mapping of the Human Brain, page 643, 2000.

44

C.F. Beckmann, J.A. Noble, and S.M. Smith.
Artefact detection in FMRI data using independent component analysis.
In Sixth Int. Conf. on Functional Mapping of the Human Brain, page 614, 2000.

45

M. Jenkinson and S.M. Smith.
Global optimisation for robust affine registration.
In Sixth Int. Conf. on Functional Mapping of the Human Brain, page 479, 2000.

46

S.M. Smith.
Robust automated brain extraction.
In Sixth Int. Conf. on Functional Mapping of the Human Brain, page 625, 2000.

47

S.M. Smith, N. De Stefano, M. Jenkinson, and P.M. Matthews.
SIENA - normalised accurate measurement of longitudinal brain change.
In Sixth Int. Conf. on Functional Mapping of the Human Brain, page 659, 2000.

48

M.W. Woolrich, B.D. Ripley, J.M. Brady, and S.M. Smith.
Nonparametric estimation of temporal autocorrelation in FMRI.
In Sixth Int. Conf. on Functional Mapping of the Human Brain, page 610, 2000.

49

Y. Zhang, M. Brady, and S. Smith.
A hidden Markov random field model for segmentation of brain MR images.
SPIE Proceedings, 3979: Medical Imaging, 2000.

50

S.M. Smith and M. Jenkinson.
Robust accurate symmetry plane estimation.
In Int. Workshop on Biomedical Image Registration, pages 244-261, 1999.

51

S.M. Smith and M. Jenkinson.
Accurate robust symmetry estimation.
In Medical Image Computing and Computer-Assisted Intervention, pages 308-317, 1999.

52

S.M. Smith and M. Jenkinson.
Accurate robust symmetry estimation.
In Medical Imaging Understanding and Analysis, 1999.

53

S.M. Smith.
Robust accurate mid-plane estimation.
In Fifth Int. Conf. on Functional Mapping of the Human Brain, page 28, 1999.

54

S.M. Smith and P.M. Matthews.
Structural brain change analysis.
In Fifth Int. Conf. on Functional Mapping of the Human Brain, page 27, 1999.

55

Y. Zhang, S.M. Smith, and J.M. Brady.
Segmentation of brain MR images using Markov random field.
In Medical Imaging Understanding and Analysis, pages 65-68, 1999.

56

M. Jenkinson and S.M. Smith.
An investigation of the robustness of registration methods.
In Int. Workshop on Biomedical Image Registration, pages 200-210, 1999.

57

N. Evangelou, M. Lee, S. Smith, J. Palace, and P.M. Matthews.
Lesion probability maps (LPMs) demonstrate identical spatial distribution of the T1 hypointense and T2 hyperintense brain lesions in multiple sclerosis.
In Proc. Meeting of the Association of British Neurologists, April 1998.

58

I. Tracey, S. Clare, R.C. Miall, S.M. Smith, P.G. Morris, and P.M. Matthews.
Implicit and explicit memory: fMRI of a pre-learned motor sequence.
In Fourth Int. Conf. on Functional Mapping of the Human Brain, page 834, 1998.

59

S.M. Smith, P.M. Matthews, J.M. Gurd, and A. Slater.
Multi-subject statistic map combination.
In Fourth Int. Conf. on Functional Mapping of the Human Brain, page 759, 1998.

60

S.M. Smith.
Integrated real-time motion segmentation and 3D interpretation.
In Proc. 13th Int. Conf. on Pattern Recognition, volume 3, pages 49-55, 1996.

61

S.M. Smith.
Flexible filter neighbourhood designation.
In Proc. 13th Int. Conf. on Pattern Recognition, volume 1, pages 206-212, 1996.

62

S.M. Smith.
ASSET-2: Real-time motion segmentation and shape tracking.
In Proc. 5th Int. Conf. on Computer Vision, pages 237-244, 1995.

63

S.M. Smith.
ALV guidance in the presence of static and moving obstacles.
In British Machine Vision Association meeting on Robot Guidance, April 1994.
No proceedings.

64

S.M. Smith.
ASSET-2: Visual tracking of moving vehicles.
In IEE Colloquium on Image Processing for Transport Applications, December 1993.

65

S.M. Smith and J.M. Brady.
A Scene Segmenter; visual tracking of moving vehicles.
In 1st IFAC International Workshop on Intelligent Autonomous Vehicles, pages 119-126, April 1993.

66

S.M. Smith.
A new class of corner finder.
In Proc. 3rd British Machine Vision Conference, pages 139-148, 1992.

67

D. Sinclair, A. Blake, S. Smith, and C. Rothwell.
Planar region detection and motion recovery.
In Proc. 3rd British Machine Vision Conference, 1992.

68

S.M. Smith, N. De Stefano, M. Jenkinson, and P.M. Matthews.
Measurement of brain change over time.
Internal Technical Report TR00SMS1, Oxford Centre for Functional Magnetic Resonance Imaging of the Brain, Department of Clinical Neurology, Oxford University, Oxford, UK, 2000.
Available at www.fmrib.ox.ac.uk/~ for downloading.

69

S.M. Smith.
Bet: Brain extraction tool.
Internal Technical Report TR00SMS2, Oxford Centre for Functional Magnetic Resonance Imaging of the Brain, Department of Clinical Neurology, Oxford University, Oxford, UK, 2000.
Available at www.fmrib.ox.ac.uk/~ for downloading.

70

M. Jenkinson and S. M. Smith.
Optimisation in robust linear registration of brain images.
Internal Technical Report TR00MJ2, Oxford Centre for Functional Magnetic Resonance Imaging of the Brain, Department of Clinical Neurology, Oxford University, Oxford, UK, 2000.

71

S.M. Smith, P.M. Matthews, J.M. Gurd, and A. Slater.
Statistic map combination from multi-subject functional MRI experiments.
Internal Technical Report TR98SMS2, Oxford Centre for Functional Magnetic Resonance Imaging of the Brain, Department of Clinical Neurology, Oxford University, Oxford, UK, 1998.
Available at www.fmrib.ox.ac.uk/~steve for downloading.

72

S.M. Smith.
Flow estimation using more information.
Internal Technical Report TR98SMS1, Oxford Centre for Functional Magnetic Resonance Imaging of the Brain, Department of Clinical Neurology, Oxford University, Oxford, UK, 1998.
Available at www.fmrib.ox.ac.uk/~steve for downloading.

73

S.M. Smith, J.M. Brady, and J.S.A. Merron.
Complex motion analysis and understanding AS053 P57: 12 month milestone.
Departmental Report DRA/LS(LSF1)/CR9643/1.0, DRA Chertsey, March 1996.

74

S.M. Smith.
Integrated real-time motion segmentation and 3D interpretation.
Internal Technical Report TR96SMS1, Defence Research Agency, Chobham Lane, Chertsey, Surrey, UK, 1996.
Available at www.fmrib.ox.ac.uk/~steve for downloading.

75

S.M. Smith.
Edge thinning used in the SUSAN edge detector.
Internal Technical Report TR95SMS5, Defence Research Agency, Chobham Lane, Chertsey, Surrey, UK, 1995.
Available at www.fmrib.ox.ac.uk/~steve for downloading.

76

S.M. Smith.
Project AS053 P57 research review and plan.
Internal Technical Report TR95SMS4, Defence Research Agency, Chobham Lane, Chertsey, Surrey, UK, 1995.

77

S.M. Smith.
ALTRUISM: Interpretation of three-dimensional information for autonomous vehicle control.
Internal Technical Report TR95SMS3, Defence Research Agency, Chobham Lane, Chertsey, Surrey, UK, 1995.
Available at www.fmrib.ox.ac.uk/~steve for downloading.

78

S.M. Smith.
ASSET-2: Real-time motion segmentation and object tracking.
Internal Technical Report TR95SMS2, Defence Research Agency, Chobham Lane, Chertsey, Surrey, UK, 1995.
Available at www.fmrib.ox.ac.uk/~steve for downloading.

79

S.M. Smith.
SUSAN - a new approach to low level image processing.
Internal Technical Report TR95SMS1, Defence Research Agency, Chobham Lane, Chertsey, Surrey, UK, 1995.
Available at www.fmrib.ox.ac.uk/~steve for downloading.

80

S.M. Smith.
A fast image edge finder: AS033 P39 final report.
Divisional Report DRA/FV&S3/CR95/006/1.0, DRA Chertsey, March 1995.

81

S.M. Smith and J.S.A. Merron.
Methods to process 3D scene structure information: AS033 P33 final report.
Divisional Report DRA/FV&S3/CR95/017/1.0, DRA Chertsey, March 1995.

82

S.M. Smith.
Methods to process 3D scene structure information: AS033 P33 12 month milestone.
Divisional Report DRA/FV&S3/CR94/006/1.0, DRA Chertsey, March 1994.

83

S.M. Smith.
Final report - strategic research project AS023 P28 - image processing for ALV guidance and obstacle avoidance.
Project report, DRA Chertsey, 1993.

84

S.M. Smith.
A fast image edge finder: AS033 P39 6 month milestone.
Divisional Report DRA/FV&S3/CR93/005/1.0, DRA Chertsey, October 1993.

85

S.M. Smith.
Detection and tracking of moving objects using a passive vision system.
Divisional Note FV&S5/02/93, DRA Chertsey, February 1993.

86

S.M. Smith.
Static obstacle detection using a passive vision system.
Progress report, DRA Chertsey, September 1992.

87

S.M. Smith.
A new class of corner finder for use in computer vision systems.
RARDE Memorandum 7/92, RARDE (Chertsey), April 1992.

88

S.M. Smith.
Direct applications of low level image processing to high level uses.
RARDE Divisional Note VT4/09/90, RARDE (Chertsey), September 1990.

89

S.M. Smith.
A brief quantitative assessment of a passive 3D measurement system.
RARDE Memorandum 31/90, DRA Chertsey, Chobham Lane, Chertsey, Surrey, UK, August 1990.

90

S.M. Smith.
Extracting information from images.
First year D.Phil. report, Robotics Research Group, Department of Engineering Science, Oxford University, June 1990.

91

S.M. Smith.
A preliminary assessment of the passive 3D measurement system DROID.
RARDE Divisional Note VT4/05/90, RARDE (Chertsey), April 1990.

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