Chapter 15

Authors: Mark Jenkinson and Steve M. Smith (FMRIB Centre, Oxford)

Section 15.1. Introduction
Section 15.2. Preliminaries
15.2.1: Unwarping geometric distortion
15.2.2: Removing non-brain structures
15.2.3: Bias field removal

Section 15.3. Registration
15.3.1: Concepts
15.3.2: Interpolation
15.3.3: Manual registration
15.3.4: Automatic registration

Section 15.4. Atlases
15.4.1: Templates
15.4.2: Example: atlas of Talairach and Tournoux
15.4.3: Probabilistic atlases

Section 15.5. Cortical Flattening
15.5.1: Extraction and cuts
15.5.2: Inflation
15.5.3: Flattening

Section 15.6. Example Applications
15.6.1: Localising activations
15.6.2: Correlating functional and anatomical information
15.6.3: Mapping functional activations in visual cortex

Section 15.A. Mathematical Definitions
15.A.1: Intra-modal
15.A.2: Inter-modal