Chapter 11

Overview of fMRI Analysis

Author: Steve M. Smith (FMRIB Centre, Oxford)

Section 11.1. Introduction
Section 11.2. fMRI Data
Section 11.3. Preparing fMRI Data for Statistical Analysis
Section 11.4. Statistical Analysis of Activation Images
11.4.1: General linear model - overview
11.4.2: Inference (thresholding)

Section 11.5. Multi-Subject Statistics
Section 11.6. Registration, Brain Atlases and Cortical Flattening
Section 11.7. Extracting Brain Connectivity
Section 11.8. GLM-Based Analysis Example
11.8.1: First-level analysis
11.8.2: Second-level analysis