Index

_

__call__() (gyral_structure.basis.evaluator.IdentityEvaluator method) (gyral_structure.basis.evaluator.MultEvaluator method) (gyral_structure.basis.evaluator.RequestEvaluator method) (gyral_structure.basis.radial.CompactRBFSympy method) (gyral_structure.cuda.CudaMatrixMult method) (gyral_structure.cuda.GridConvolve method) __init__() (gyral_structure.algorithm.SettingsContext method) (gyral_structure.basis.core.BasisFunc method) (gyral_structure.basis.core.SumBase method) (gyral_structure.basis.evaluator.FuncRequestEvaluator method) (gyral_structure.basis.evaluator.IdentityEvaluator method) (gyral_structure.basis.evaluator.MatRequestEvaluator method) (gyral_structure.basis.evaluator.MultEvaluator method) (gyral_structure.basis.evaluator.RequestEvaluator method) (gyral_structure.basis.grid.Grid method) (gyral_structure.basis.radial.CompactRBFSympy method) (gyral_structure.basis.radial.RadialBasis method) (gyral_structure.basis.radial.RadialBasisCudaEvaluator method) (gyral_structure.basis.tricubic.Tricubic method) (gyral_structure.basis.unbounded.ChargeDistribution method) (gyral_structure.basis.unbounded.Fourier method) (gyral_structure.basis.unbounded.Gradient method) (gyral_structure.basis.unbounded.Polynomial method) (gyral_structure.cost.core.CostEvaluator method) (gyral_structure.cost.core.CostFunc method) (gyral_structure.cost.core.SympyCost method) (gyral_structure.cost.core.VectorCost method) (gyral_structure.cost.dens.InnerCost method) (gyral_structure.cost.dens.L1Density method) (gyral_structure.cost.dens.L2Density method) (gyral_structure.cost.dens.MinInner method) (gyral_structure.cost.dens.SameDensity method) (gyral_structure.cost.dens.TargetInner method) (gyral_structure.cost.dens.TotalIntersect method) (gyral_structure.cost.meta.ExponentAdd method) (gyral_structure.cost.meta.MinCost method) (gyral_structure.cost.meta.PowerCost method) (gyral_structure.cost.meta.Smoothness method) (gyral_structure.cost.meta.SumCost method) (gyral_structure.cost.meta.WeightedCost method) (gyral_structure.cost.orient.BinghamDistribution method) (gyral_structure.cost.orient.BinghamDistributionSympy method) (gyral_structure.cost.orient.NormedInner method) (gyral_structure.cost.orient.VonMises method) (gyral_structure.cost.orient.Watson method) (gyral_structure.cost.param.ParamMatMult method) (gyral_structure.cost.param.ParamTargetVec method) (gyral_structure.cost.param.ParamVecMult method) (gyral_structure.cuda.CudaMatrixMult method) (gyral_structure.cuda.GridConvolve method) (gyral_structure.cuda.QuadraticConvolution method) (gyral_structure.request.DerivativeRequest method) (gyral_structure.request.MultRequest method) (gyral_structure.request.PositionRequest method) (gyral_structure.request.VertexRequest method) (gyral_structure.request.VoxelRequest method) (gyral_structure.streamline.Tracker method)

A

add_constraint() (gyral_structure.cost.meta.SumCost method) Algorithm (class in gyral_structure.algorithm) all_derivatives() (gyral_structure.request.DerivativeRequest static method)

apply_affine() (gyral_structure.basis.grid.Grid method) arg_min() (gyral_structure.cost.meta.MinCost method) as_volume() (gyral_structure.request.FieldRequest method)

B

BasisFunc (class in gyral_structure.basis.core) BinghamDistribution (class in gyral_structure.cost.orient) BinghamDistributionSympy (class in gyral_structure.cost.orient) bounding_box() (gyral_structure.basis.radial.RadialBasis method) (gyral_structure.cost.core.CostEvaluator method) (gyral_structure.cost.core.CostFunc method) (gyral_structure.request.FieldRequest method) (gyral_structure.request.MultRequest method) (gyral_structure.request.VertexRequest method) (gyral_structure.request.VoxelRequest method)

buhmann() (in module gyral_structure.basis.radial)

C

cached_func (in module gyral_structure.cuda) cached_source_module (in module gyral_structure.cuda) center() (gyral_structure.request.FieldRequest method) (gyral_structure.request.MultRequest method) (gyral_structure.request.VertexRequest method) ChargeDistribution (class in gyral_structure.basis.unbounded) clean_results() (gyral_structure.basis.evaluator.FuncRequestEvaluator method) (gyral_structure.basis.evaluator.IdentityEvaluator method) (gyral_structure.basis.evaluator.MatRequestEvaluator method) (gyral_structure.basis.evaluator.MultEvaluator method) (gyral_structure.basis.evaluator.RequestEvaluator method) (gyral_structure.basis.radial.RadialBasisCudaEvaluator method) code() (gyral_structure.cuda.CudaMatrixMult method) (gyral_structure.cuda.GridConvolve method) (gyral_structure.cuda.QuadraticConvolution method) code_derivative_convolve() (gyral_structure.cuda.QuadraticConvolution method) code_derivative_sum() (gyral_structure.cuda.QuadraticConvolution method) combine() (gyral_structure.request.DerivativeRequest method) (gyral_structure.request.FieldRequest method) (gyral_structure.request.PositionRequest method) (gyral_structure.request.VertexRequest method) (gyral_structure.request.VoxelRequest method) combine_results() (gyral_structure.basis.evaluator.FuncRequestEvaluator method) (gyral_structure.basis.evaluator.IdentityEvaluator method) (gyral_structure.basis.evaluator.MatRequestEvaluator method) (gyral_structure.basis.evaluator.MultEvaluator method) (gyral_structure.basis.evaluator.RequestEvaluator method) (gyral_structure.basis.grid.GridFuncRequestEvaluator method) (gyral_structure.basis.radial.RadialBasisCudaEvaluator method) CompactRBFSympy (class in gyral_structure.basis.radial) compile_func() (gyral_structure.cuda.CudaMatrixMult method) compute (gyral_structure.basis.core.BasisFunc attribute) (gyral_structure.basis.radial.RadialBasis attribute) (gyral_structure.basis.trilinear.TriLinear attribute) (gyral_structure.basis.unbounded.ChargeDistribution attribute) (gyral_structure.basis.unbounded.Fourier attribute) (gyral_structure.basis.unbounded.Gradient attribute) (gyral_structure.basis.unbounded.Polynomial attribute)

compute() (gyral_structure.basis.core.SumBase property) contributors() (gyral_structure.basis.grid.Grid method) convolve (gyral_structure.algorithm.Algorithm attribute) correct_type() (in module gyral_structure.cuda) cost() (gyral_structure.cost.core.CostEvaluator method) (gyral_structure.cost.core.CostFunc method) (gyral_structure.cost.core.SympyCost method) (gyral_structure.cost.core.VectorCost method) (gyral_structure.cost.dens.InnerCost method) (gyral_structure.cost.dens.MinInner method) (gyral_structure.cost.dens.TotalIntersect method) (gyral_structure.cost.meta.ExponentAdd method) (gyral_structure.cost.meta.MinCost method) (gyral_structure.cost.meta.PowerCost method) (gyral_structure.cost.meta.Smoothness method) (gyral_structure.cost.meta.SumCost method) (gyral_structure.cost.meta.WeightedCost method) (gyral_structure.cost.orient.BinghamDistribution method) (gyral_structure.cost.orient.NormedInner method) (gyral_structure.cost.param.L2Params method) (gyral_structure.cost.param.ParamMatMult method) (gyral_structure.cost.param.ParamTargetVec method) (gyral_structure.cost.param.ParamVecMult method) CostEvaluator (class in gyral_structure.cost.core) CostFunc (class in gyral_structure.cost.core) cuda (gyral_structure.algorithm.Algorithm attribute) CudaMatrixMult (class in gyral_structure.cuda) cvxopt_solve() (gyral_structure.cost.core.CostEvaluator method)

D

dense_mult_prepare() (in module gyral_structure.cuda) dercost() (gyral_structure.cost.core.CostEvaluator method) (gyral_structure.cost.core.CostFunc method) (gyral_structure.cost.core.SympyCost method) (gyral_structure.cost.core.VectorCost method) (gyral_structure.cost.dens.InnerCost method) (gyral_structure.cost.dens.MinInner method) (gyral_structure.cost.dens.TotalIntersect method) (gyral_structure.cost.meta.ExponentAdd method) (gyral_structure.cost.meta.MinCost method) (gyral_structure.cost.meta.PowerCost method) (gyral_structure.cost.meta.Smoothness method) (gyral_structure.cost.meta.SumCost method) (gyral_structure.cost.meta.WeightedCost method) (gyral_structure.cost.orient.BinghamDistribution method) (gyral_structure.cost.orient.NormedInner method) (gyral_structure.cost.param.L2Params method) (gyral_structure.cost.param.ParamMatMult method) (gyral_structure.cost.param.ParamTargetVec method) (gyral_structure.cost.param.ParamVecMult method)

derivative() (gyral_structure.cuda.QuadraticConvolution method) DerivativeRequest (class in gyral_structure.request) describe_fit() (gyral_structure.cost.core.CostEvaluator method) (gyral_structure.cost.core.GenericCost method) (gyral_structure.cost.meta.ExponentAdd method) (gyral_structure.cost.meta.MinCost method) (gyral_structure.cost.meta.SumCost method) (gyral_structure.cost.meta.WeightedCost method) dict_to_field() (gyral_structure.request.FieldRequest method) (gyral_structure.request.MultRequest method) dyad_from_mm() (in module gyral_structure.utils) dyad_to_mm() (in module gyral_structure.utils)

E

epsilon (gyral_structure.cost.core.GenericCost attribute) evaluate() (gyral_structure.cuda.QuadraticConvolution method) evaluate_B() (gyral_structure.cost.orient.BinghamDistribution method) evaluate_results() (gyral_structure.basis.evaluator.FuncRequestEvaluator method) (gyral_structure.basis.evaluator.IdentityEvaluator method) (gyral_structure.basis.evaluator.MatRequestEvaluator method) (gyral_structure.basis.evaluator.MultEvaluator method) (gyral_structure.basis.evaluator.RequestEvaluator method) (gyral_structure.basis.grid.GridFuncRequestEvaluator method) (gyral_structure.basis.radial.RadialBasisCudaEvaluator method)

evaluate_sympy() (gyral_structure.cost.core.SympyCost method) ExponentAdd (class in gyral_structure.cost.meta)

F

field_symbols (gyral_structure.cost.core.SympyCost attribute) (gyral_structure.cost.dens.SameDensity attribute) (gyral_structure.cost.dens.TargetInner attribute) (gyral_structure.cost.orient.VonMises attribute) (gyral_structure.cost.orient.Watson attribute) field_to_dict() (gyral_structure.request.FieldRequest method) (gyral_structure.request.MultRequest method) FieldRequest (class in gyral_structure.request) fit() (gyral_structure.cost.core.CostEvaluator method) fix() (gyral_structure.basis.core.SumBase method) fix_all() (gyral_structure.basis.core.SumBase method) fixed_field (gyral_structure.basis.evaluator.MultEvaluator attribute) flatten() (gyral_structure.request.FieldRequest method) (gyral_structure.request.MultRequest method)

Fourier (class in gyral_structure.basis.unbounded) from_hdf5() (gyral_structure.basis.core.BasisFunc class method) (gyral_structure.basis.core.SumBase class method) (gyral_structure.basis.radial.RadialBasis class method) (gyral_structure.basis.unbounded.ChargeDistribution class method) (gyral_structure.basis.unbounded.Fourier class method) (gyral_structure.basis.unbounded.Gradient class method) (gyral_structure.basis.unbounded.Polynomial class method) from_mask() (gyral_structure.cost.meta.Smoothness class method) from_request() (gyral_structure.cost.meta.Smoothness class method) full_chain() (in module gyral_structure.algorithm) func() (gyral_structure.basis.evaluator.FuncRequestEvaluator method) FuncRequestEvaluator (class in gyral_structure.basis.evaluator) funcstr() (gyral_structure.cost.core.SympyCost property)

G

GenericCost (class in gyral_structure.cost.core) get_a() (gyral_structure.basis.unbounded.Gradient method) get_b() (gyral_structure.basis.unbounded.Gradient method) get_basisfunc() (in module gyral_structure.basis.core) get_evaluator() (gyral_structure.basis.core.BasisFunc method) (gyral_structure.basis.core.SumBase method) (gyral_structure.basis.evaluator.MultEvaluator method) (gyral_structure.cost.core.GenericCost method) (gyral_structure.request.FieldRequest method) get_filetype() (in module gyral_structure.utils) get_full_func() (gyral_structure.basis.grid.Grid method) get_full_mat() (gyral_structure.basis.core.BasisFunc method) (gyral_structure.basis.grid.Grid method) (gyral_structure.basis.radial.RadialBasis method) get_func() (gyral_structure.basis.core.BasisFunc method) (gyral_structure.basis.radial.CompactRBFSympy method) (gyral_structure.basis.radial.RadialBasis method) (gyral_structure.basis.trilinear.TriLinear method) (gyral_structure.basis.unbounded.ChargeDistribution method) (gyral_structure.basis.unbounded.Fourier method) (gyral_structure.basis.unbounded.Gradient method) (gyral_structure.basis.unbounded.Polynomial method) get_partial_mat() (gyral_structure.basis.core.BasisFunc method) (gyral_structure.basis.radial.RadialBasis method) (gyral_structure.basis.tricubic.Tricubic method) (gyral_structure.basis.trilinear.TriLinear method) (gyral_structure.basis.unbounded.ChargeDistribution method) (gyral_structure.basis.unbounded.Fourier method) (gyral_structure.basis.unbounded.Gradient method) (gyral_structure.basis.unbounded.Polynomial method)

get_single_evaluator() (in module gyral_structure.basis.evaluator) get_variables() (gyral_structure.cost.core.SympyCost method) global_cuda_params (gyral_structure.basis.radial.RadialBasisCudaEvaluator attribute) Gradient (class in gyral_structure.basis.unbounded) Grid (class in gyral_structure.basis.grid) grid_to_pos_field() (in module gyral_structure.basis.trilinear) grid_to_pos_scalar() (in module gyral_structure.basis.tricubic) (in module gyral_structure.basis.trilinear) GridConvolve (class in gyral_structure.cuda) GridFuncRequestEvaluator (class in gyral_structure.basis.grid) gyral_structure (module), [1] gyral_structure.algorithm (module) gyral_structure.basis (module) gyral_structure.basis.core (module) gyral_structure.basis.evaluator (module) gyral_structure.basis.grid (module) gyral_structure.basis.radial (module) gyral_structure.basis.tricubic (module) gyral_structure.basis.trilinear (module) gyral_structure.basis.unbounded (module) gyral_structure.cost (module), [1] gyral_structure.cost.core (module), [1] gyral_structure.cost.dens (module), [1] gyral_structure.cost.meta (module), [1] gyral_structure.cost.orient (module), [1] gyral_structure.cost.param (module), [1] gyral_structure.cuda (module) gyral_structure.request (module) gyral_structure.streamline (module) gyral_structure.utils (module)

H

hcp_packing() (in module gyral_structure.basis.radial) hessp() (gyral_structure.cost.core.CostEvaluator method) (gyral_structure.cost.core.CostFunc method) (gyral_structure.cost.core.VectorCost method) (gyral_structure.cost.dens.InnerCost method) (gyral_structure.cost.dens.MinInner method) (gyral_structure.cost.dens.TotalIntersect method) (gyral_structure.cost.meta.MinCost method) (gyral_structure.cost.meta.PowerCost method) (gyral_structure.cost.meta.SumCost method) (gyral_structure.cost.meta.WeightedCost method) (gyral_structure.cost.orient.NormedInner method)

I

IdentityEvaluator (class in gyral_structure.basis.evaluator) independent_pos (gyral_structure.cost.core.GenericCost attribute) (gyral_structure.cost.dens.TotalIntersect attribute)

InnerCost (class in gyral_structure.cost.dens) invert_a() (gyral_structure.basis.unbounded.Gradient method) invert_b() (gyral_structure.basis.unbounded.Gradient method)

L

L1Density (class in gyral_structure.cost.dens) L2Density (class in gyral_structure.cost.dens)

L2Params (class in gyral_structure.cost.param) length() (gyral_structure.cost.core.VectorCost method) loop_basis() (gyral_structure.basis.evaluator.MultEvaluator static method)

M

mat() (gyral_structure.basis.evaluator.MultEvaluator method) MatRequestEvaluator (class in gyral_structure.basis.evaluator) matrix (gyral_structure.algorithm.Algorithm attribute) matrix_cuda (gyral_structure.algorithm.Algorithm attribute) maxk() (gyral_structure.cost.orient.BinghamDistribution property) min_dist() (gyral_structure.request.FieldRequest method) (gyral_structure.request.MultRequest method)

MinCost (class in gyral_structure.cost.meta) MinInner (class in gyral_structure.cost.dens) mult_iter() (gyral_structure.cost.meta.WeightedCost method) MultEvaluator (class in gyral_structure.basis.evaluator) MultRequest (class in gyral_structure.request)

N

n_field() (gyral_structure.cuda.GridConvolve property) n_kernels() (gyral_structure.cuda.GridConvolve property) n_params() (gyral_structure.cuda.GridConvolve property) ndim (gyral_structure.basis.core.BasisFunc attribute) (gyral_structure.basis.grid.Grid attribute) ndim() (gyral_structure.basis.core.SumBase property) (gyral_structure.basis.evaluator.RequestEvaluator property) (gyral_structure.basis.radial.RadialBasis property) (gyral_structure.basis.unbounded.Gradient property) (gyral_structure.cost.core.CostEvaluator property) (gyral_structure.cost.core.CostFunc property) (gyral_structure.cost.meta.SumCost property) (gyral_structure.request.FieldRequest property) (gyral_structure.request.MultRequest property) (gyral_structure.request.VertexRequest property) NoCombineError NormedInner (class in gyral_structure.cost.orient)

nparams() (gyral_structure.basis.core.SumBase property) (gyral_structure.basis.evaluator.RequestEvaluator property) (gyral_structure.basis.grid.Grid property) (gyral_structure.basis.radial.RadialBasis property) (gyral_structure.basis.unbounded.Gradient property) (gyral_structure.basis.unbounded.Polynomial property) (gyral_structure.cost.core.CostEvaluator property) npos() (gyral_structure.basis.evaluator.RequestEvaluator property) (gyral_structure.cost.core.CostEvaluator property) (gyral_structure.cost.core.CostFunc property) (gyral_structure.request.FieldRequest property) (gyral_structure.request.MultRequest property) (gyral_structure.request.VertexRequest property) nsplit() (gyral_structure.request.VertexRequest property) (gyral_structure.request.VoxelRequest property) numba (gyral_structure.algorithm.Algorithm attribute) numpy (gyral_structure.algorithm.Algorithm attribute)

O

order() (gyral_structure.basis.unbounded.Gradient property)

P

param_evaluator() (gyral_structure.basis.core.BasisFunc method) (gyral_structure.basis.core.SumBase method) ParamCost (class in gyral_structure.cost.param) ParamMatMult (class in gyral_structure.cost.param) params_per_grid (gyral_structure.basis.grid.Grid attribute) (gyral_structure.basis.trilinear.TriLinear attribute) params_per_grid() (gyral_structure.basis.tricubic.Tricubic property) ParamTargetVec (class in gyral_structure.cost.param) ParamVecMult (class in gyral_structure.cost.param) per_voxel() (gyral_structure.cuda.QuadraticConvolution method) poly_coeffs() (gyral_structure.basis.unbounded.Polynomial method) poly_to_pos_scalar() (in module gyral_structure.basis.tricubic) (in module gyral_structure.basis.trilinear)

Polynomial (class in gyral_structure.basis.unbounded) PositionRequest (class in gyral_structure.request) positions (gyral_structure.request.FieldRequest attribute) potential (gyral_structure.basis.core.BasisFunc attribute) (gyral_structure.basis.radial.RadialBasis attribute) (gyral_structure.basis.tricubic.Tricubic attribute) (gyral_structure.basis.unbounded.ChargeDistribution attribute) (gyral_structure.basis.unbounded.Fourier attribute) (gyral_structure.basis.unbounded.Gradient attribute) (gyral_structure.basis.unbounded.Polynomial attribute) potential() (gyral_structure.basis.evaluator.RequestEvaluator property) PowerCost (class in gyral_structure.cost.meta) precompute_evaluator() (gyral_structure.basis.core.BasisFunc method) (gyral_structure.basis.radial.RadialBasis method)

Q

qp() (gyral_structure.cost.core.CostEvaluator method) (gyral_structure.cost.core.CostFunc method) (gyral_structure.cost.core.VectorCost method) (gyral_structure.cost.dens.InnerCost method) (gyral_structure.cost.dens.MinInner method) (gyral_structure.cost.dens.TotalIntersect method) (gyral_structure.cost.meta.SumCost method) (gyral_structure.cost.meta.WeightedCost method)

quadratic (gyral_structure.cost.core.GenericCost attribute) (gyral_structure.cost.dens.InnerCost attribute) (gyral_structure.cost.dens.TotalIntersect attribute) quadratic() (gyral_structure.cost.core.CostEvaluator property) (gyral_structure.cost.core.VectorCost property) (gyral_structure.cost.dens.MinInner property) (gyral_structure.cost.meta.SumCost property) (gyral_structure.cost.meta.WeightedCost property) QuadraticConvolution (class in gyral_structure.cuda)

R

RadialBasis (class in gyral_structure.basis.radial) RadialBasisCudaEvaluator (class in gyral_structure.basis.radial) RadialGPUArrays (in module gyral_structure.basis.radial) radius() (gyral_structure.request.DerivativeRequest method) (gyral_structure.request.FieldRequest method) (gyral_structure.request.MultRequest method) (gyral_structure.request.VertexRequest method) (gyral_structure.request.VoxelRequest method) read() (in module gyral_structure.basis.core) (in module gyral_structure.cost.core) read_bedpostx() (in module gyral_structure.request) read_pickle() (in module gyral_structure.basis.core) read_surface() (in module gyral_structure.request)

read_volume() (in module gyral_structure.request) read_wb_bingham() (gyral_structure.cost.orient.BinghamDistribution class method) release() (gyral_structure.basis.core.SumBase method) release_all() (gyral_structure.basis.core.SumBase method) request (gyral_structure.cost.param.ParamCost attribute) request() (gyral_structure.cost.meta.ExponentAdd property) (gyral_structure.cost.meta.MinCost property) (gyral_structure.cost.meta.PowerCost property) (gyral_structure.cost.meta.SumCost property) (gyral_structure.cost.meta.WeightedCost property) RequestEvaluator (class in gyral_structure.basis.evaluator) rotation_matrix() (gyral_structure.cost.orient.BinghamDistribution static method) run_gpu() (gyral_structure.cuda.QuadraticConvolution method) run_gpu_der() (gyral_structure.cuda.QuadraticConvolution method)

S

SameDensity (class in gyral_structure.cost.dens) save() (gyral_structure.basis.core.BasisFunc method) (gyral_structure.basis.core.SumBase method) (gyral_structure.cost.core.CostFunc method) scalar (gyral_structure.basis.core.BasisFunc attribute) (gyral_structure.basis.radial.RadialBasis attribute) (gyral_structure.basis.tricubic.Tricubic attribute) (gyral_structure.basis.unbounded.ChargeDistribution attribute) (gyral_structure.basis.unbounded.Fourier attribute) (gyral_structure.basis.unbounded.Gradient attribute) (gyral_structure.basis.unbounded.Polynomial attribute) scalar() (gyral_structure.basis.evaluator.RequestEvaluator property) scalar_nparams() (gyral_structure.basis.core.BasisFunc property) scaling() (gyral_structure.request.FieldRequest method) set() (in module gyral_structure.algorithm) SettingsContext (class in gyral_structure.algorithm) shift() (gyral_structure.request.FieldRequest method) simplify (gyral_structure.cost.core.SympyCost attribute) size() (gyral_structure.request.VertexRequest method) Smoothness (class in gyral_structure.cost.meta) sparse_mult_prepare() (in module gyral_structure.cuda) split() (gyral_structure.request.DerivativeRequest method) (gyral_structure.request.FieldRequest method) (gyral_structure.request.PositionRequest method) (gyral_structure.request.VertexRequest method) (gyral_structure.request.VoxelRequest method)

split_cuda() (gyral_structure.request.DerivativeRequest method) (gyral_structure.request.FieldRequest method) (gyral_structure.request.PositionRequest method) (gyral_structure.request.VertexRequest method) (gyral_structure.request.VoxelRequest method) stack_matrices() (gyral_structure.basis.core.BasisFunc method) SumBase (class in gyral_structure.basis.core) SumCost (class in gyral_structure.cost.meta) surface_startpoints() (in module gyral_structure.streamline) symmetric (gyral_structure.cost.core.GenericCost attribute) (gyral_structure.cost.dens.InnerCost attribute) (gyral_structure.cost.dens.MinInner attribute) (gyral_structure.cost.dens.SameDensity attribute) (gyral_structure.cost.orient.NormedInner attribute) symmetric() (gyral_structure.cost.core.VectorCost property) (gyral_structure.cost.orient.VonMises property) (gyral_structure.cost.orient.Watson property) SympyCost (class in gyral_structure.cost.core)

T

TargetInner (class in gyral_structure.cost.dens) to_gpu_correct() (in module gyral_structure.cuda) to_hdf5() (gyral_structure.basis.core.BasisFunc method) (gyral_structure.basis.core.SumBase method) (gyral_structure.basis.radial.RadialBasis method) (gyral_structure.basis.unbounded.ChargeDistribution method) (gyral_structure.basis.unbounded.Fourier method) (gyral_structure.basis.unbounded.Gradient method) (gyral_structure.basis.unbounded.Polynomial method) to_indices() (gyral_structure.basis.grid.Grid method)

to_vtk() (in module gyral_structure.streamline) total_split() (gyral_structure.request.DerivativeRequest property) (gyral_structure.request.PositionRequest property) (gyral_structure.request.VertexRequest property) (gyral_structure.request.VoxelRequest property) TotalIntersect (class in gyral_structure.cost.dens) track() (gyral_structure.streamline.Tracker method) Tracker (class in gyral_structure.streamline) Tricubic (class in gyral_structure.basis.tricubic) TriLinear (class in gyral_structure.basis.trilinear)

U

update_indices() (gyral_structure.basis.radial.RadialBasisCudaEvaluator method) update_pos() (gyral_structure.basis.evaluator.FuncRequestEvaluator method) (gyral_structure.basis.evaluator.IdentityEvaluator method) (gyral_structure.basis.evaluator.MatRequestEvaluator method) (gyral_structure.basis.evaluator.MultEvaluator method) (gyral_structure.basis.evaluator.RequestEvaluator method) (gyral_structure.basis.radial.RadialBasisCudaEvaluator method) (gyral_structure.streamline.Tracker method)

use_cuda (gyral_structure.basis.evaluator.IdentityEvaluator attribute) (gyral_structure.basis.radial.RadialBasisCudaEvaluator attribute) use_cuda() (gyral_structure.basis.evaluator.MultEvaluator property) (gyral_structure.basis.evaluator.RequestEvaluator property) use_mat (gyral_structure.basis.radial.RadialBasisCudaEvaluator attribute) use_mat() (gyral_structure.basis.evaluator.MultEvaluator property) (gyral_structure.basis.evaluator.RequestEvaluator property)

V

validate() (gyral_structure.basis.core.BasisFunc method) validate_pos() (gyral_structure.basis.core.BasisFunc method) (gyral_structure.basis.core.SumBase method) (gyral_structure.basis.grid.Grid method) VectorCost (class in gyral_structure.cost.core)

vectors() (gyral_structure.cost.core.SympyCost method) VertexRequest (class in gyral_structure.request) volume_startpoints() (in module gyral_structure.streamline) VonMises (class in gyral_structure.cost.orient) VoxelRequest (class in gyral_structure.request)

W

Watson (class in gyral_structure.cost.orient) WeightedCost (class in gyral_structure.cost.meta) wendland() (in module gyral_structure.basis.radial) within_range() (gyral_structure.basis.radial.RadialBasis method) wrap_get_element() (in module gyral_structure.cuda)

wrap_numba() (in module gyral_structure.basis.core) wrap_qp() (gyral_structure.basis.evaluator.MatRequestEvaluator method) (gyral_structure.basis.evaluator.MultEvaluator method) (gyral_structure.request.FieldRequest method) (gyral_structure.request.MultRequest method)