1999	D.Phil., Robotics Research Group (University of Oxford)
	Thesis title: Saliency in Image Analysis
	Supervisor: Prof. Sir Michael Brady
1994	B.Sc. (Hons), First Class Honours in Mathematical Physics (University of Adelaide)
	Graduated at top of the honours list.
	Thesis on the Numerical Simulation of Chaotic Cosmological Models.
	Double major in Computer Science and Mathematical Physics.
	Equal highest results given subject selection.
1993	B.E. (Hons), First Class Honours in Engineering (Electrical and Electronic)
	(University of Adelaide)
	Graduated at top of the honours list with highest results in each year.
	Projects in Adaptive Control and Spread Spectrum Communications.

2003-	Head of Structural Image Analysis, FMRIB Centre, University of Oxford
	Research interests: statistical shaped-based anatomical segmentation of multiple brain structures leading to non-linear registration; simulation of the MRI processes for studying artefacts; joint estimation and correction of motion-based fMRI artefacts; EEG/MEG/fMRI integration modelling. Responsibilities: supervising students and post-doctoral scientists in collaborative research projects; software development and maintenance for FSL package utilities and libraries.
2002	Post-Doctoral Scientist, NeuroImaging Group, Howard Florey Insitute, University of Melbourne
	Research interests: non-linear registration of MRI; EEG/fMRI integration; database contruction and analysis of structural MRI sets; modelling of MRI processes and artefacts; modelling and inference in group studies.
1998-2001	Post-Doctoral Scientist, Image Analysis Group, FMRIB Centre, University of Oxford
	Research interests: registration of MRI-MRI and fMRI-MRI; motion correction for fMRI; phase unwrapping; interpolation; spatial clustering and statistical analysis; correcting distortion of EPI images and the impact on statistical inference. Have written software for linear registration, motion correction, phase unwrapping and correction of EPI distortions. Extensive involvement in building up a local software development environment including a 4D image manipulation library. All software has been extensively tested and made freely available via the internet.
1995-1998	Robotics Research Group, University of Oxford
	Thesis entitled Saliency in Image Analysis under the supervision of Prof. Sir Michael Brady. The research looks at shape representations based on local symmetries. It deals with methods for extraction and decomposition for 2D shapes, with occlusion reasoning. Previous research experience in computer vision includes real-time tracking, object localisation and recognition, plus noise analysis of low-level image invariants.
	Teaching
2006-2008	Tutor for first-year undergraduate psychology students at St Anne's College in Introduction to Probability Theory and Statistics.
2003-	Co-ordinator, lecturer and tutor for Image Analysis teaching in the FMRIB Graduate Training Program.
2002-	Co-ordinator, lecturer and demonstrator for the FSL and FreeSurfer course (a 4-5 day course attracting international researchers and students covering the theory and practice of image analysis using FSL).
	Additional experience in lecturing and tutoring students in image analysis and statistics at University level.

2009		ISMRM Outstanding Teacher Award (Quantitative Imaging and Data Analysis)
2005		Awarded a David Phillips Fellowship from the UK BBSRC (total funds £395K)
2005		DTI Grant (co-applicant) - Functional brain imaging: Relating patient data to the population (total funds £150K)
2004		EPSRC Grant (co-applicant) - Integrated Brain Image Modelling (total funds £750K)
2004		Awarded a Departmental Merit Award (Clinical Neurology)
2002		GlaxoSmithKline Grant (co-author) - FMRI Group Statistics (total funds £190K)
1995		Awarded the Sir Robert Menzies Scholarship in Engineering
		Awarded the George Murray Scholarship
1993		The Electricity Trust Prize in Electrical Power Engineering
		The Philips Industries Holdings Ltd. Prize in Electronics
1991		The Gerard Industries ``Clipsal'' Prize
		The Chamber of Commerce and Industry Prize in Electrical Engineering
		The Chamber of Commerce and Industry Prize in Electronic Engineering
		The Sir William Goodman Scholarship
1990		The E.V. Clark Prize for Electrical Engineering
		The Lincolne Scott Prize for Academic Excellence
1989		The Sir Robert Chapman Prize
		The IEE (UK) Prize (for outstanding academic achievement)
1988		Electricity Trust of South Australia (ETSA) Studentship

Member of ISMRM Scientific Annual Meeting Program Committee 2005-2008

Co-Organiser of Educational Courses on Advanced Data Analysis and Image Processing (ISMRM 2008)

Co-Organiser of Workshop on Pairwise and Groupwise Registration (MICCAI 2007)

Co-Organiser of Two Day Educational Course on Quantitative Data and Image Analysis (ISMRM 2006, 2007)

Member of NIH Data Format Working Group (NIfTI) 2004-2007

Member of WBIR 2006 Program Committee

Member of IEEE (Institute of Electrical and Electronic Engineers) 2003-

Member of ISMRM (International Society of Magnetic Resonance in Medicine) 2001-

Good Clinical Practice training: 21 June 2010

2003	Dr Peter Bannister	Motion Correction for Functional Magnetic Resonance Images
2007	Dr Ivana Drobnjak	FMRI Simulator: Development and Applications
2007	Dr Caitlinn Loftus	Integration of Functional Magnetic Resonance Imaging and Electroencephalography Data using Independent Component Analysis
2008	Dr Brian Patenaude	Bayesian Statistical Models of Shape and Appearance for Subcortical Brain Segmentation
2011	Dr Aleksandar Petrovic	Registration using Diffusion and Structural Imaging
	Ms Courtney Bishop (nee Birch)	Image Analysis for Clinical Brain Imaging with MR and PET
	Ms Andri Tziortzi	Quantitative Analysis of the Dopamine D3 receptor in-vivo in humans
	Mr Mattias Heinrich	Modelling the Tumour Microenvironment
	Mr Manav Bhushan	Dynamic Image Registration

Experience in :	C and C++ programming.
	Software development for multi-platform compilation.
	Linux/Unix, MATLAB, LaTeX, HTML and TCL/TK.

Journal Articles and Book Chapters

• Jenkinson M., Beckmann, C.F., Behrens, T.E., Woolrich, M.W., and Smith S.M.
  FSL
  NeuroImage, 2011 (in press).

• Kong, Y., Jenkinson, M., Andersson, J., Tracey, I., and Brooks, J.C.
  Assessment of Physiological Noise Modelling Methods for Functional Imaging of the Spinal Cord
  NeuroImage, 2011 (in press).

• Kincses, Z.T., Szabó, N., Valálik, I., Kopniczky, Z., Dézsi, L., Klivényi, P., Jenkinson, M., Király, A., Babos, M., Vörös, E., Barzó, P., Vécsei, L.
  Target identification for stereotactic thalamotomy using diffusion tractography
  PLoS ONE, 2011 (in press).

• Patenaude, B., Smith, S.M., Kennedy, D., and Jenkinson M.
  A Bayesian Model of Shape and Appearance for Subcortical Brain
  NeuroImage, 56(3):907-922, 2011.

• Sallet, J., Mars, R.B., Noonan, M.P., Andersson, J.L., O'Reilly, J.X., Jbabdi, S., Croxson, P.L., Jenkinson, M., Miller, K.L., and Rushworth, M.F.S.
  Social Network Size Affects Neural Circuits in Macaques
  Science, 697-700, 4 November 2011.

• Wartolowska, K., Hough, M.G., Jenkinson, M., Andersson, J., Wordsworth, P.B., and Tracey, I.
  Structural brain changes in rheumatoid arthritis
  Arthritis and Rheumatism, 2011 (in press).

• Tondelli, M., Wilcock, G.K., Nichelli, P., de Jager, C., Jenkinson, M., and Zamboni, G.
  Structural MRI changes detectable up to ten years before clinical Alzheimer's disease
  Neurobiology of Aging, 2011 (in press).

• Gelineau-Morel, R., Tomassini, V., Jenkinson, M., Johansen-Berg, H., Matthews, P.M., and Palace, J.
  The effect of hypointense white matter lesions on automated grey matter segmentation in multiple sclerosis
  Human Brain Mapping, 2011 (in press).

• Marcus, D., Harwell, J., Olsen, T., Hodge, M., Glasser, M., Prior, F., Jenkinson, M., Laumann, T., Curtiss, S., and Van Essen, D.
  Informatics and Data Mining Tools and Strategies for the Human Connectome Project
  Frontiers in Neuroinformatics, 5, 2011.

• Murphy, K., van Ginneken, B., et al.
  Evaluation of Registration Methods on Thoracic CT: The EMPIRE10 Challenge
  IEEE Transactions on Medical Imaging, 30(11):1901-1920, 2011.

• Battaglini, M., Jenkinson, M., and De Stefano, N.
  Evaluating and Reducing the Impact of White Matter Lesions on Brain Volume Measurements
  Human Brain Mapping, 2011 (in press).

• Miller, K., Stagg, C.J., Douaud, G., Jbabdi, S. Smith, S.M., Behrens, T.E., Jenkinson, M., Chance, S.A., Esiri, M.M., Voets, N.L., Jenkinson, N., Aziz, T.Z., Turner, M., Johansen-Berg, H., and McNab, J.A.
  Diffusion imaging of whole, post-mortem human brains on a clinical MRI scanner
  NeuroImage, 57(1):167-181, 2011.

• Nunes, R.G., Drobnjak, I., Clare, S., Jezzard, P., Jenkinson, M.
  Performance of single spin-echo and doubly refocused diffusion-weighted sequences in the presence of eddy current fields with multiple components
  Magnetic Resonance Imaging, 29(5):659-667, 2011.

• Bishop, C.A., Jenkinson, M., Declerck, J., and Merhof, D.
  Novel Fast Marching for Automated Segmentation of the Hippocampus (FMASH): Method and Validation on Clinical Data
  NeuroImage, 55(3):1009-1019, 2011.

• Kincses, Z.T., Ropele, S., Jenkinson, M., Khalil, M., Petrovic, K., Loitfelder, M., Langkammer, C., Aspeck, E., Wallner-Blazek, M., Fuchs, S., Jehna, M., Schmidt, R., Vecsei, L., Fazekas, F., and Enzinger, C.
  Lesion probability mapping to explain clinical deficits and cognitive performance in multiple sclerosis
  Multiple Sclerosis, 17(6):681-689, 2011.

• Tziortzi, A.C., Searle, G.E., Tzimopoulou, S., Salinas, C., Beaver, J.D., Jenkinson, M., Laruelle, M., Rabiner, E .A. and Gunn, R.N.
  Imaging dopamine receptors in humans with [11C]-(+)-PHNO: Dissection of D3 signal and anatomy
  NeuroImage, 54(1):264-277, 2011.

• Drobnjak, I., Pell, G., and Jenkinson, M.
  Simulating the effects of time-varying magnetic fields with a realistic simulated scanner
  Magnetic Resonance Imaging, 28(7):1014-21, 2010.

• Zarei, M., Patenaude, B., Damoiseaux, J., Morgese, C., Smith, S., Matthews, P.M., Barkhof, F., Rombouts, S., Sanz-Arigita, E. and Jenkinson, M.
  Combining Shape and Connectivity Analysis: An MRI study of Thalamic Degeneration in Alzheimer's Disease
  NeuroImage, 49(1):1-8, 2010.

• Gallichan, D., Andersson, J.L.R., Jenkinson, M., Robson, M.D., and Miller, K.L.
  Reducing distortions in Diffusion-weighted Echo Planar Imaging with a dual- echo blip-reversed sequence
  Magnetic Resonance in Medicine, 64(2):382-90, 2009.

• Babalola, K.O., Patenaude, B., Aljabar, P., Schnabel, J., Kennedy, D., Crum, W., Smith, S., Cootes, T., Jenkinson, M. and Rueckert, D.
  An evaluation of four automatic methods of segmenting the subcortical structures in the brain.
  NeuroImage, 47(4):1435-1447, 2009.

• Woolrich, M., Jbabdi, S., Patenaude, B., Chappell, M., Makni, S., Behrens, T., Beckmann, C., Jenkinson, M., Smith, S.M.
  Bayesian Analysis of Neuroimaging Data in FSL
  NeuroImage, 45(1S1):173-186, 2009.

• Klein, A., Andersson, J., Ardekani, B.A., Ashburner, J., Avants, B., Chiang, M-C., Christensen, G.E., Collins, L., Hellier, P., Jenkinson, M., Lepage, C., Rueckert, D., Song, J H., Thompson, P., Vercauteren, T.., Woods, R.P., Mann, J.J. and Parsey, R.V.
  Evaluation of 14 nonlinear deformation algorithms applied to human brain MRI registration
  NeuroImage, 46(3):786-802, 2009.

• Harvey, A.K., Pattinson, K.T.S., Brooks, J.C.W., Mayhew, S.D., Jenkinson, M., and Wise, R.G.
  Brainstem Functional Magnetic Resonance Imaging: Disentangling Signal From Physiological Noise
  JMRI, 28(6):1337-44, 2008.

• Sun, D., Stuart, G.W., Jenkinson, M., Wood, S.J., McGorry, P.D., Velakoulis, D., van Erp, T.G.M., Thompson, P.M., Toga, A.W., Smith, D.J., Cannon, T.D., and Pantelis, C.
  Brain surface contraction mapped in first-episode schizophrenia: a longitudinal magnetic resonance imaging study
  Molecular Psychiatry, 14(10):976-986, 2008.

• Brooks, J., Beckmann, C.F., Miller, K.L., Wise, R.G., Porro, C.A., Tracey, I., and Jenkinson, M.
  Physiological noise modelling for spinal functional magnetic resonance imaging studies
  NeuroImage, 39(2):680-692, 2008.

• Smith, S.M., Johansen-Berg, H., Jenkinson, M., Rueckert, D., Nichols, T.E., Miller, K.L., Robson, M.D., Jones, D.K., Klein, J.C., Bartsch, A.J., and Behrens, T.E.J.
  A Protocol for Acquisition and Voxelwise Analysis of Multi-Subject Diffusion Data with Tract-Based Spatial Statistics
  Nature Protocols, 2(3):499-503, 2007.

• Bartsch, A.J., Homola, G., Biller, A., Smith, S.M., Weijers, H-G., Wiesbeck, G.A., Jenkinson, M., De Stefano, N., Solymosi, L., and Bendszus, M.
  Manifestations of early brain recovery associated with abstinence from alcoholism
  Brain, 130:36-47, 2007.

• Smith, S.M., Jenkinson, M., Beckmann, C.F., Miller, K.L., and Woolrich, M.W.
  Meaningful Design and Contrast Estimability in FMRI
  Neuroimage, 34(1), 127-136, 2007.

• Bannister, P.R., Brady, J.M. and Jenkinson, M.
  Integrating Temporal Information with a Non-rigid Method of Motion Correction for Functional Magnetic Resonance Images
  Image and Vision Computing, 25(2), 311-320, 2007.

• S.M. Smith, A. Rao, N. De Stefano, M. Jenkinson, J.M. Schott, P.M. Matthews, and N.C. Fox.
  Longitudinal and cross-sectional analysis of atrophy in Alzheimer's disease: Cross-validation of BSI, SIENA and SIENAX
  NeuroImage, 36(4):1200-1206, 2007.

• Douaud, G., Smith, S., Jenkinson, M., Behrens, T., Johansen-Berg, H., Vickers, J., James, S., Voets, N., Watkins, K., Matthews, P.M., and James, A.
  Anatomically-related grey and white matter abnormalities in adolescent-onset schizophrenia
  Brain, 130:2375-2386, 2007.

• Zarei, M., Johansen-Berg, H., Jenkinson, M., Ciccarelli, O., Thompson, A.J. and Matthews, P.M.
  Two-dimensional population map of cortical connections in the human internal capsule
  Journal of Magnetic Resonance Imaging, 25(1), 48-54, 2007.

• Drobnjak, I., Gavaghan, D., Suli, E., Pitt-Francis, J., and Jenkinson, M.
  Development of an FMRI Simulator for Modelling Realistic Rigid-Body Motion Artifacts
  Magnetic Resonance in Medicine, 52(6), 364-380, 2006.

• Smith, S.M., Jenkinson, M., Johansen-Berg, H., Rueckert, D., Nichols, T., Mackay, C., Watkins, K., Ciccarelli, O., Cader, M., Matthews, P., and Behrens, T.
  Tract-Based Spatial Statistics: Voxelwise Analysis of Multi-Subject Diffusion Data
  Neuroimage, 31(4), 1487-1505, 2006.

• Beckmann, C.F., Jenkinson, M., Woolrich, M.W., Behrens, T.E.J., Flitney, D.E.F., Devin, J.T., and Smith, S.M.
  Applying FSL to the FIAC Data: Model-Based and Model-Free Analysis of Voice and Sentence Repetition Priming
  Human Brain Mapping, 27(5), 380-391, 2006.

• Behrens, T.E.J., Jenkinson, M., Robson, M.D., Smith, S.M., and Johansen-Berg, H.
  A consistent relationship between local white matter architecture and functional specialisation in medial frontal cortex
  Neuroimage, 30(1), 220-227, 2006.

• Bridge, H., Clare, S., Jenkinson, M., Jezzard, P., Parker, A.J., and Matthews, P.M.
  Independent anatomical and functional measures of the V1/V2 boundary in huma n visual cortex
  Journal of Vision, 5(2), 93-102, 2005.

• Osterbauer, R.A., Matthews, P.M., Jenkinson, M., Beckmann, C.F., Hansen, P.C., and Calvert, G.A.
  The color of scents: chromatic stimuli modulate odor responses in the human brain
  J Neurophysiol, 93(6):3434-3441, 2005.

• Smith, S., Beckmann, C., Ramnani, N., Woolrich, M., Bannister, P., Jenkinson, M., Matthews, P., and McGonigle, D.
  Variability in FMRI: A re-examination of intersession differences
  Human Brain Mapping, 24(3), 248-257, 2005.

• Jenkinson, M., Wilson, J., and Jezzard, P.
  A Perturbation Method for Magnetic Field Calculations of Non-Conductive Objects
  Magnetic Resonance in Medicine, 52(3), 471-477, 2004.

• Woolrich, M., Jenkinson, M., Brady, J. and Smith, S.
  Fully Bayesian spatio-temporal modelling of FMRI data
  IEEE Trans. on Medical Imaging, 23(2), 213-231, 2004.

• Woolrich, M.W., Behrens, T.E.J., Beckmann, C.F., Jenkinson, M. and Smith, S.M.
  Multi-Level Linear Modelling for FMRI Group Analysis Using Bayesian Inference
  Neuroimage, 21(4), 1732-1747, 2004.

• Smith, S.M., Jenkinson, M., Woolrich, M.W., Beckmann, C.F., Behrens, T.E. J., Johansen-Berg, H., Bannister, P.R., De Luca, M., Drobnjak, I., Flitney, D., Niazy, R., Saunders, J., Vickers, J., Zhang, Y., De Stefano, N., Brady, J.M. and Matthews, P.M.
  Advances in functional and structural MR image analysis and implementation a s FSL
  Neuroimage, 23(S1), S208-S219, 2004.

• Jenkinson, M.
  A Fast, Automated, N-Dimensional Phase Unwrapping Algorithm
  Magnetic Resonance in Medicine, 49(1), 193-197, 2003.

• Walters, N., Egan, G., Kril, J.J., Kean, M., Waley, P., Jenkinson, M. and Watson, J.D.
  In vivo identification of human cortical areas using high-resolution MRI: an approach to cerebral structure-function correlation
  Proc Natl Acad Sci USA (PNAS), 100(5):2981-6, 2003.

• Beckmann, C.*, Jenkinson, M.* and Smith, S.
  General multi-level linear modelling for group analysis in FMRI
  NeuroImage, 20(2), 1052-1063, 2003.
  * the first two authors contributed equally

• Wilson, J. L., Jenkinson, M. and Jezzard, P.
  Protocol to Determine the Optimal Intra-Oral Passive Shim for Minimization of Susceptibility Artifact in Human Inferior Frontal Cortex
  NeuroImage, 19(4), 1802-1811, 2003.

• Behrens, T., Woolrich, M., Jenkinson, M., Johansen-Berg, H., Nunes, R., Clare, S., Matthews, P., Brady, J. and Smith, S.
  Characterisation and propagation of uncertainty in diffusion weighted MR imaging
  Magnetic Resonance in Medicine, 50(5), 1077-1088, 2003.

• Jenkinson, M., Bannister, P., Brady, J. M. and Smith, S. M.
  Improved Optimisation for the Robust and Accurate Linear Registration and Motion Correction of Brain Images
  NeuroImage, 17(2), 825-841, 2002.

• Wilson, J. L., Jenkinson, M., de Araujo, I., Kringelbach, M. L., Rolls, E . T. and Jezzard, P.
  Fast, Fully Automated Global and Local Magnetic Field Optimisation for fMRI of the Human Brain
  NeuroImage, 17(2), 967-976, 2002.

• Wilson, J., Jenkinson, M. and Jezzard, P.
  Optimisation of Static Field Homogeneity in Human Brain Using Diamagnetic Passive Shims
  Magnetic Resonance in Medicine, 48(5), 906-914, 2002.

• Jenkinson, M. and Brady, J. M.
  A Saliency-Based Hierarchy for Local Symmetries
  Image and Vision Computing, 20(2), 85-101, 2002.

• Smith, S.M., Zhang, Y., Jenkinson, M., Chen, J., Matthews, P., Federico, A. and De Stefano, N.
  Accurate, robust and automated longitudinal and cross-sectional brain change analysis
  NeuroImage, 17(1), 479-489, 2002.

• Parry, A., Clare, S., Jenkinson, M., Smith, S. M., Palace, J. and Matthews, P. M.
  White matter and lesion T1 relaxation times increase in parallel and correlate with disability in multiple sclerosis
  In Journal of Neurology, 249 (9), 1279-1286, 2002.

• Jenkinson, M. and Smith, S. M.
  A Global Optimisation Method for Robust Affine Registration of Brain Images
  Medical Image Analysis, 5(2), 143-156, 2001.

• Jenkinson, M.
  Structural Imaging in fMRI: Registration, Atlases and Cortical Flattening
  Chapter in Functional Magnetic Resonance Imaging of the Brain: An Introductory Guide, Eds. P. Jezzard, P.M. Matthews and S.M. Smith, 2001, Oxford University Press

• Jenkinson, M. and Smith, S. M.
  The Role of Registration in Functional Magnetic Resonance Imaging
  Chapter 8 in Medical Image Registration, Ed. J. V. Hajnal, D. L. G. Hill and D. J. Hawkes June 2001, CRC Press

• Smith, S. M., De Stefano, N., Jenkinson, M. and Matthews, P. M.
  Normalised accurate measurement of longitudinal brain change
  Journal of Computer Assisted Tomography, 25(3), 466-475, 2001.

• Reddy, H., Narayanan, S., Arnoutelis, R., Jenkinson, M., Antel, J., Matthews, P.M. and Arnold, D.L.
  Evidence for Adaptive Functional Changes in the Cerebral Cortex with Axonal Injury from Multiple Sclerosis
  In Brain, 123(11):2314-2320, 2000.

• Lee, M., Reddy, H., Johansen-Berg, H., Pendlebury, S., Jenkinson, M., Smith, S., Palace, J. and Matthews, P.M.
  The Motor Cortex Shows Adaptive Functional Changes to Brain Injury from Multiple Sclerosis
  In Annals of Neurology, 47(5):606-613, 2000.

• Jenkinson, M.
  Saliency in Image Analysis
  D. Phil. Thesis, Robotics Research Group, Department of Engineering Science, University of Oxford, 1999.

Selected Refereed Conference Proceedings

• Poynton, C., Jenkinson, M., Whalen, S., Golby A.J., and Wells, W.
  Fieldmap-Free Retrospective Registration and Distortion Correction for EPI-based Functional Imaging
  Lecture Notes in Computer Science, Medical Image Computing and Computer Assisted Intervention (MICCAI) 271-279, 2008.

• Babalola, K., Patenaude, B., Aljabar, P., Schnabel, J., Kennedy, D., Crum, W., Smith, S., Cootes, T., Jenkinson, M., and Rueckert, D.
  Comparison and Evaluation of Segmentation Techniques for Sub-cortical Structures in Brain MRI Lecture Notes in Computer Science, Medical Image Computing and Computer Assisted Intervention (MICCAI) 409-416, 2008.

• Zollei, L., Jenkinson, M., Timoner, S., and Wells, W.
  A marginalized MAP approach and EM optimization for pair-wise registration.
  Inf Process Med Imaging, 20:662-74, 2007.

• Patenaude, B., Smith, S., Kennedy, D., and Jenkinson, M.
  FIRST - FMRIB's Integrated Registration and Segmentation Tool.
  In Thirteenth Annual Meeting of the Organization for Human Brain Mapping - HBM, 2007.

• Jenkinson, M.
  Constrained non-linear registration of EPI and structural images.
  In Twelfth Annual Meeting of the Organization for Human Brain Mapping - HBM, 2006.

  Babalola, K.O., Cootes, T.F., Patenaude, B., Rao, A., and Jenkinson, M.
  Comparing the Similarity of Statistical Shape Models Using the Bhattacharya Metric
  Lecture Notes in Computer Science, Medical Image Computing and Computer Assisted Intervention (MICCAI), 142-150, 2006.

• Crum, W.R., Camara, O., Rueckert, D., Bhatia, K., Jenkinson, M. and Hill, D.L.G.
  Generalised Overlap Measures for Assessment of Pairwise and Groupwise Image Registration and Segmentation
  Lecture Notes in Computer Science, Medical Image Computing and Computer Assisted Intervention (MICCAI), 99-106, 2005.

• Jenkinson, M., Pechaud, M., and Smith, S.
  BET2: MR-based estimation of brain, skull and scalp surfaces.
  In Eleventh Annual Meeting of the Organization for Human Brain Mapping - HBM, 2005.

• Nunes, R.G., Drobnjak, I., Clare, S., Jezzard, P., and Jenkinson, M.
  Quantitative simulation of affine registration for correction of eddy current distortions in diffusion-weighted images.
  In Int. Soc. of Magnetic Resonance in Medicine - ISMRM, 2005.

• Crum, W., Rueckert, D., Jenkinson, M., Kennedy, D. and Smith, S.
  A Framework For Detailed Objective Comparison of Non-Rigid Registration Algorithms in Neuroimaging
  Lecture Notes in Computer Science, Medical Image Computing and Computer Assisted Intervention (MICCAI), 679-686, 2004.

• Jenkinson, M.
  Improving the Registration of B₀-distorted EPI Images using Calculated Cost Function Weights
  In Tenth Annual Meeting of the Organization for Human Brain Mapping - HBM, 2004.

• Drobnjak, I. and Jenkinson, M.
  FMRI simulation and its application in modelling the interaction of motion and B0-inhomogeneities
  In Tenth Annual Meeting of the Organization for Human Brain Mapping - HBM, 2004.

• The MIDAS Consortium: Boada, F., Collins, L., Drobnjak, I., Eddy, W., Evans, A., Griffin, M., Jenkinson, M., Noll, D., Pike, B., Shi, H., Shroff, D., Stenger, A., Worsley, K.
  MIDAS - A Multi-Site FMRI Simulator Consortium
  In Tenth Annual Meeting of the Organization for Human Brain Mapping - HBM, 2004.

• Drobnjak, I. and Jenkinson, M.
  Modelling FMRI motion artifacts using a simulated scanner
  In Int. Soc. of Magnetic Resonance in Medicine - ISMRM, 2004.

• Freire, L., Orchard, J., Jenkinson, M. and Mangin, J.F.
  Reducing activation-related bias in FMRI registration
  In 2nd International Conference on Medical Imaging and Augmented Reality, LNCS 3150, Beijing, China, August 2004

• Jenkinson, M., Wilson, J. and Jezzard, P.
  A Perturbation Method for B₀ Field Calculations of Non-Conductive Objects
  In Int. Soc. of Magnetic Resonance in Medicine - ISMRM, 2002.

• Jenkinson, M., Woolrich, M., Leibovici, D., Smith, S. M. and Beckmann, C.
  Group Analysis in FMRI using General Multi-Level Linear Modelling
  In Eighth Annual Meeting of the Organization for Human Brain Mapping - HBM, 2002.

• Jenkinson, M.
  Improved Unwarping of EPI Volumes using Regularised B₀ Maps
  In Seventh Annual Meeting of the Organization for Human Brain Mapping - HBM, 2001.

• Smith, S. M. and Jenkinson, M..
  Accurate robust symmetry estimation.
  In Medical Image Computing and Computer-Assisted Intervention, pages 308-317, 1999.

• Smith, S. M. and Jenkinson, M..
  Accurate robust symmetry estimation
  Lecture Notes in Computer Science, Medical Image Computing and Computer Assisted Intervention (MICCAI), 308-317, 1999.